Variant report

Variant	rs527275416
Chromosome Location	chr3:119576377-119576378
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011178	chr3:119437192-119589116	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv536703	chr3:119437192-119589116	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv949589	chr3:119560606-120175917	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv829696	chr3:119567659-119711405	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1001476	chr3:119575386-120075417	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
6	nsv536704	chr3:119575386-120075417	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119529600-119582000	Weak transcription	Spleen	Spleen
2	chr3:119536600-119576400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:119539000-119576400	Weak transcription	Ovary	ovary
4	chr3:119540400-119576600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:119540800-119577000	Weak transcription	Aorta	Aorta
6	chr3:119541000-119581600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr3:119541200-119587000	Weak transcription	Gastric	stomach
8	chr3:119542400-119581200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr3:119542600-119581600	Weak transcription	HUVEC	blood vessel
10	chr3:119545000-119576400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr3:119545200-119583400	Weak transcription	Brain Angular Gyrus	brain
12	chr3:119545800-119576400	Weak transcription	Brain Germinal Matrix	brain
13	chr3:119545800-119581600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr3:119546000-119576400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr3:119546000-119663400	Weak transcription	Lung	lung
16	chr3:119546400-119580400	Weak transcription	HepG2	liver
17	chr3:119548600-119576600	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr3:119548600-119581600	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr3:119549000-119577200	Weak transcription	Small Intestine	intestine
20	chr3:119549200-119581600	Weak transcription	Brain Hippocampus Middle	brain
21	chr3:119551200-119576800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr3:119551400-119594600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr3:119551800-119580600	Weak transcription	NH-A	brain
24	chr3:119551800-119581400	Weak transcription	Osteobl	bone
25	chr3:119552200-119576400	Weak transcription	A549	lung
26	chr3:119552200-119576600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr3:119552200-119577000	Weak transcription	HSMMtube	muscle
28	chr3:119552200-119582000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr3:119560400-119576400	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr3:119560400-119576800	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr3:119561200-119581400	Weak transcription	Hela-S3	cervix
32	chr3:119561200-119581600	Weak transcription	Right Ventricle	heart
33	chr3:119561200-119581600	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr3:119561200-119591200	Weak transcription	Stomach Mucosa	stomach
35	chr3:119562400-119576600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr3:119562400-119576800	Weak transcription	Left Ventricle	heart
37	chr3:119562400-119577000	Weak transcription	Thymus	Thymus
38	chr3:119562400-119611000	Weak transcription	Fetal Stomach	stomach
39	chr3:119562600-119576600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr3:119562600-119576600	Weak transcription	Psoas Muscle	Psoas
41	chr3:119562600-119581600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr3:119562800-119576600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr3:119564000-119581800	Weak transcription	Brain Substantia Nigra	brain
44	chr3:119566000-119581600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr3:119566400-119576600	Weak transcription	Brain Cingulate Gyrus	brain
46	chr3:119566800-119586000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr3:119567000-119605200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr3:119568000-119577000	Weak transcription	Brain Anterior Caudate	brain
49	chr3:119569400-119629400	Weak transcription	Esophagus	oesophagus
50	chr3:119569600-119576400	Weak transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links