Variant report

Variant	nsv1004858
Chromosome Location	chr4:118248984-118382051
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BACH1	chr4:118323436-118323468	H1-hESC	embryonic stem cell:	n/a	n/a
2	CBX3	chr4:118321267-118321684	HCT-116	colon:	n/a	chr4:118321304-118321315
3	CEBPB	chr4:118333846-118334182	HepG2	liver:	n/a	chr4:118334008-118334019
4	CEBPB	chr4:118338078-118338345	IMR90	lung:	n/a	n/a
5	CEBPB	chr4:118314143-118314469	IMR90	lung:	n/a	n/a
6	CEBPB	chr4:118261348-118261590	IMR90	lung:	n/a	n/a
7	CEBPB	chr4:118257900-118258196	HepG2	liver:	n/a	chr4:118258085-118258098 chr4:118258085-118258098 chr4:118258087-118258096 chr4:118258087-118258096 chr4:118258085-118258096 chr4:118258086-118258097 chr4:118258087-118258096 chr4:118258087-118258096
8	CEBPB	chr4:118338686-118338912	IMR90	lung:	n/a	n/a
9	CEBPB	chr4:118273357-118273662	HepG2	liver:	n/a	chr4:118273477-118273488
10	CEBPB	chr4:118341725-118342029	HepG2	liver:	n/a	chr4:118341866-118341877 chr4:118341891-118341902 chr4:118341866-118341879 chr4:118341868-118341877 chr4:118341867-118341878 chr4:118341868-118341877 chr4:118341868-118341877 chr4:118341868-118341877
11	CEBPB	chr4:118323695-118323971	HepG2	liver:	n/a	chr4:118323852-118323865 chr4:118323852-118323863 chr4:118323803-118323820 chr4:118323852-118323865 chr4:118323805-118323816 chr4:118323852-118323863 chr4:118323853-118323864 chr4:118323852-118323865 chr4:118323768-118323785
12	CEBPB	chr4:118323728-118323964	IMR90	lung:	n/a	chr4:118323852-118323865 chr4:118323852-118323863 chr4:118323803-118323820 chr4:118323852-118323865 chr4:118323805-118323816 chr4:118323852-118323863 chr4:118323853-118323864 chr4:118323852-118323865 chr4:118323768-118323785
13	CEBPB	chr4:118341771-118341971	A549	lung:	n/a	chr4:118341866-118341877 chr4:118341891-118341902 chr4:118341866-118341879 chr4:118341868-118341877 chr4:118341867-118341878 chr4:118341868-118341877 chr4:118341868-118341877 chr4:118341868-118341877
14	CEBPB	chr4:118339135-118339335	IMR90	lung:	n/a	n/a
15	CEBPB	chr4:118333842-118334173	K562	blood:	n/a	chr4:118334008-118334019
16	CEBPB	chr4:118377164-118377381	HepG2	liver:	n/a	chr4:118377254-118377265
17	CEBPB	chr4:118273372-118273627	A549	lung:	n/a	chr4:118273477-118273488
18	CEBPB	chr4:118333829-118334187	IMR90	lung:	n/a	chr4:118334008-118334019
19	CEBPB	chr4:118333852-118334143	A549	lung:	n/a	chr4:118334008-118334019
20	CEBPB	chr4:118333928-118334149	H1-hESC	embryonic stem cell:	n/a	chr4:118334008-118334019
21	CEBPB	chr4:118321302-118321657	IMR90	lung:	n/a	n/a
22	CTCF	chr4:118369140-118369290	GM12872	blood:	n/a	n/a
23	CTCF	chr4:118350440-118350590	GM12867	blood:	n/a	n/a
24	CTCF	chr4:118369160-118369310	HUVEC	blood vessel:	n/a	n/a
25	CTCF	chr4:118350340-118350490	GM12868	blood:	n/a	n/a
26	CTCF	chr4:118369220-118369370	MCF-7	breast:	n/a	n/a
27	CTCF	chr4:118350300-118350450	WERI-Rb-1	eye:	n/a	n/a
28	CTCF	chr4:118369200-118369350	AG09319	gingival:	n/a	n/a
29	CTCF	chr4:118369212-118369412	K562	blood:	n/a	n/a
30	CTCF	chr4:118350340-118350490	GM12869	blood:	n/a	n/a
31	CTCF	chr4:118369194-118369340	GM20000	blood:	n/a	n/a
32	CTCF	chr4:118369106-118369454	HepG2	liver:	n/a	n/a
33	CTCF	chr4:118369200-118369350	K562	blood:	n/a	n/a
34	CTCF	chr4:118369280-118369430	GM12867	blood:	n/a	n/a
35	CTCF	chr4:118369280-118369430	HFF-Myc	foreskin:	n/a	n/a
36	CTCF	chr4:118369500-118369650	GM12868	blood:	n/a	n/a
37	CTCF	chr4:118350380-118350530	GM12875	blood:	n/a	n/a
38	CTCF	chr4:118350300-118350450	HA-sp	spinal cord:	n/a	n/a
39	CTCF	chr4:118369200-118369350	GM12870	blood:	n/a	n/a
40	CTCF	chr4:118369260-118369410	Hela-S3	cervix:	n/a	n/a
41	CTCF	chr4:118350340-118350490	GM12870	blood:	n/a	n/a
42	CTCF	chr4:118368840-118368990	BE2_C	brain:	n/a	n/a
43	CTCF	chr4:118369180-118369330	HCT-116	colon:	n/a	n/a
44	CTCF	chr4:118369200-118369350	HRE	kidney:	n/a	n/a
45	CTCF	chr4:118369178-118369356	K562	blood:	n/a	n/a
46	CTCF	chr4:118369220-118369370	HEK293	kidney:	n/a	n/a
47	CTCF	chr4:118369160-118369310	GM12868	blood:	n/a	n/a
48	CTCF	chr4:118350380-118350530	NHEK	skin:	n/a	n/a
49	CTCF	chr4:118369180-118369330	MCF-7	breast:	n/a	n/a
50	CTCF	chr4:118350352-118350479	NHEK	skin:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:118377487..118379398-chr4:119198520..119200981,2	K562	blood:
2	4:118313000-118315008..4:118319405-118319911	H1-hESC	embryonic stem cell:	embryo
3	4:118357351-118360885..4:118687551-118689447	H1-hESC	embryonic stem cell:	embryo
4	4:118312235-118312291..4:118636913-118638401	H1-hESC	embryonic stem cell:	embryo
5	4:118319405-118319911..4:118559839-118566258	H1-hESC	embryonic stem cell:	embryo
6	chr4:118250398..118253057-chr4:119199125..119201119,2	MCF-7	breast:
7	4:118320200-118324249..4:118414019-118416561	Hela-S3	cervix:
8	4:118319405-118319911..4:118454469-118464115	H1-hESC	embryonic stem cell:	embryo
9	4:118291537-118294071..4:118722741-118723956	H1-hESC	embryonic stem cell:	embryo
10	4:118312235-118312291..4:118319405-118319911	H1-hESC	embryonic stem cell:	embryo
11	4:118312235-118312291..4:118319405-118319911	H1-hESC	embryonic stem cell:	embryo
12	4:118320200-118324249..4:118722741-118723956	H1-hESC	embryonic stem cell:	embryo
13	4:118313000-118315008..4:118319405-118319911	H1-hESC	embryonic stem cell:	embryo
14	4:118291537-118294071..4:118559839-118566258	H1-hESC	embryonic stem cell:	embryo
15	4:118357351-118360885..4:118541860-118551269	H1-hESC	embryonic stem cell:	embryo
16	4:118320200-118324249..4:118559839-118566258	GM12878	blood:
17	4:118301798-118302725..4:118541860-118551269	H1-hESC	embryonic stem cell:	embryo
18	4:118357351-118360885..4:118437019-118438281	H1-hESC	embryonic stem cell:	embryo
19	4:118357351-118360885..4:118559839-118566258	GM12878	blood:
20	chr4:118373648..118376261-chr4:118378262..118380604,2	K562	blood:
21	chr4:118373648..118376261-chr4:118378262..118380604,2	K562	blood:
22	4:118327401-118331084..4:118559839-118566258	GM12878	blood:
23	4:118319405-118319911..4:118687551-118689447	H1-hESC	embryonic stem cell:	embryo
24	4:118320200-118324249..4:118735152-118737645	GM12878	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NDST3-5	chr4:118292748-118292818	XLOC_003658
2	lnc-NDST3-4	chr4:118349853-118349923	ENSG00000236922.5
3	lnc-NDST3-5	chr4:118281781-118281965	XLOC_003658
4	lnc-NDST3-5	chr4:118293752-118293891	XLOC_003658
5	lnc-NDST3-5	chr4:118292748-118292818	XLOC_003658
6	lnc-NDST3-5	chr4:118281779-118281965	XLOC_003658
7	lnc-NDST3-5	chr4:118293520-118293627	XLOC_003658
8	lnc-TRAM1L1-1	chr4:118281720-118281795	XLOC_004051
9	lnc-NDST3-10	chr4:118334618-118335435	NONHSAT097958
10	lnc-NDST3-5	chr4:118292748-118292818	XLOC_003658
11	lnc-NDST3-5	chr4:118293520-118293754	XLOC_003658
12	lnc-TRAM1L1-1	chr4:118272349-118272394	XLOC_004051
13	lnc-NDST3-5	chr4:118292748-118292818	XLOC_003658
14	lnc-NDST3-4	chr4:118349850-118349923	ENSG00000236922
15	lnc-NDST3-5	chr4:118293914-118294008	XLOC_003658
16	lnc-NDST3-4	chr4:118349559-118349639	ENSG00000236922
17	lnc-NDST3-5	chr4:118293520-118293627	XLOC_003658
18	lnc-NDST3-5	chr4:118293914-118293973	XLOC_003658
19	lnc-NDST3-5	chr4:118282505-118282662	XLOC_003658
20	lnc-NDST3-5	chr4:118281822-118281965	XLOC_003658
21	lnc-NDST3-4	chr4:118349552-118349639	ENSG00000236922.5
22	lnc-NDST3-5	chr4:118292748-118292818	XLOC_003658
23	lnc-NDST3-5	chr4:118282556-118282662	XLOC_003658
24	lnc-TRAM1L1-1	chr4:118280884-118280965	XLOC_004051
25	lnc-NDST3-5	chr4:118293520-118293627	XLOC_003658
26	lnc-NDST3-5	chr4:118282557-118282662	XLOC_003658
27	lnc-NDST3-5	chr4:118282566-118282662	XLOC_003658
28	lnc-NDST3-5	chr4:118282557-118282662	XLOC_003658
29	lnc-NDST3-5	chr4:118293752-118293858	XLOC_003658
30	lnc-NDST3-5	chr4:118293520-118293891	XLOC_003658
31	lnc-NDST3-5	chr4:118292748-118292818	XLOC_003658
32	lnc-NDST3-5	chr4:118282495-118282662	XLOC_003658
33	lnc-NDST3-5	chr4:118293520-118293627	XLOC_003658

Variant related genes	Relation type
ENSG00000236922	TF binding region
ENSG00000228358	TF binding region
ENSG00000224932	TF binding region
RPSAP35	TF binding region
ENSG00000269893	chromatin interactions
ARID3B	miRNA target sites
ARF4	miRNA target sites
KIAA0528	miRNA target sites
CD46	miRNA target sites
ZCCHC14	miRNA target sites
C5orf24	miRNA target sites
EIF4G2	miRNA target sites

Extended variants
information (count: 3693 )
Associated
traits (count: 75 )

Variant overlapped rSNPs/rCNVs (count:3693 , 50 per page) page: 1 2 3 4 5 6 7 ... 74

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs142560630	chr4:118248994-118248995	Enhancers Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
2	rs75176725	chr4:118248998-118248999	Enhancers Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
3	rs374347079	chr4:118249033-118249034	Enhancers Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
4	rs183121495	chr4:118249093-118249094	Enhancers Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
5	rs188598729	chr4:118249124-118249125	Enhancers Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
6	rs540324770	chr4:118249194-118249195	Enhancers Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs74688685	chr4:118249209-118249210	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
8	rs533584143	chr4:118249213-118249214	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs370531733	chr4:118249222-118249223	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
10	rs553448458	chr4:118249241-118249242	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
11	rs573402928	chr4:118249260-118249261	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
12	rs542373071	chr4:118249277-118249278	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
13	rs5861343	chr4:118249313-118249314	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
14	rs150958558	chr4:118249439-118249440	Weak transcription Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs576228315	chr4:118249459-118249460	Weak transcription Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs545264320	chr4:118249510-118249511	Weak transcription Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs565065599	chr4:118249626-118249627	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
18	rs527674522	chr4:118249634-118249635	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
19	rs192989885	chr4:118249661-118249662	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
20	rs576806277	chr4:118249662-118249663	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
21	rs62313485	chr4:118249707-118249708	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs546204105	chr4:118249716-118249717	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
23	rs561328274	chr4:118249722-118249723	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
24	rs142497246	chr4:118249781-118249782	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
25	rs144839800	chr4:118249791-118249792	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
26	rs79144216	chr4:118249841-118249842	Active TSS	n/a	n/a	Overlapped CNVs	n/a
27	rs147949453	chr4:118249859-118249860	Active TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs552826860	chr4:118249870-118249871	Active TSS	n/a	n/a	Overlapped CNVs	n/a
29	rs141836590	chr4:118249897-118249898	Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs150492865	chr4:118249911-118249912	Active TSS	n/a	n/a	Overlapped CNVs	n/a
31	rs185684828	chr4:118249912-118249913	Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs373671155	chr4:118249923-118249924	Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs112072638	chr4:118249941-118249942	Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs115411792	chr4:118249948-118249949	Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs72681342	chr4:118250069-118250070	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs564490324	chr4:118250076-118250077	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs35884465	chr4:118250114-118250115	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs187914492	chr4:118250134-118250135	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs572381434	chr4:118250141-118250142	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs541404196	chr4:118250155-118250156	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs560195944	chr4:118250193-118250194	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs561291466	chr4:118250474-118250475	Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs530148963	chr4:118250484-118250485	Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs543883412	chr4:118250513-118250514	Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs563673622	chr4:118250560-118250561	Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs35365751	chr4:118250606-118250607	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs532738367	chr4:118250654-118250655	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs76416250	chr4:118250662-118250663	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs138142615	chr4:118250698-118250699	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs73856323	chr4:118250810-118250811	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:75)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Breast cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21785460	CNVD
Myelodysplastic syndrome	21251322	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	21183584	CNVD
primary effusion lymphomas	17116491	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
Colorectal cancer	20459617	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Breast cancer	17393978	CNVD
Esophageal cancer	21851588	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	16272173	CNVD
Testicular germ cell tumor	18059402	CNVD
Ovarian cancer	22174824	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Neuroblastoma	21899760	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18194544	CNVD
Autism	19246517	CNVD
Bipolar disorder	19114987	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	23813976	CNVD
Pancreatic cancer	17952125	CNVD
Chronic lymphocytic leukemia	21546498	CNVD

Chromatin state (count:141 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118246000-118250600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:118246200-118250400	Active TSS	HMEC	breast
3	chr4:118246400-118249600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr4:118247000-118249600	Active TSS	HSMMtube	muscle
5	chr4:118247600-118250000	Active TSS	NH-A	brain
6	chr4:118248600-118249200	Weak transcription	HSMM	muscle
7	chr4:118248600-118249600	Active TSS	Brain Anterior Caudate	brain
8	chr4:118248600-118249800	Active TSS	Brain Substantia Nigra	brain
9	chr4:118248800-118249200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr4:118248800-118249200	Enhancers	Brain Angular Gyrus	brain
11	chr4:118248800-118249200	Active TSS	Brain Hippocampus Middle	brain
12	chr4:118248800-118249400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr4:118249200-118249400	Flanking Active TSS	Brain Angular Gyrus	brain
14	chr4:118249400-118249800	Active TSS	Brain Angular Gyrus	brain
15	chr4:118249400-118249800	Enhancers	Brain Hippocampus Middle	brain
16	chr4:118249600-118249800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr4:118250000-118272600	Weak transcription	NH-A	brain
18	chr4:118250400-118250600	Weak transcription	HMEC	breast
19	chr4:118250600-118250800	Enhancers	HMEC	breast
20	chr4:118250600-118251400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr4:118250800-118257600	Weak transcription	HMEC	breast
22	chr4:118251400-118252000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr4:118251400-118256000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr4:118255200-118272800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr4:118256000-118256800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr4:118256800-118260000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr4:118257600-118258800	Strong transcription	HMEC	breast
28	chr4:118258800-118278600	Weak transcription	HMEC	breast
29	chr4:118260000-118260400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr4:118260400-118260600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr4:118260600-118262000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr4:118262000-118262400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr4:118262400-118267200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr4:118262600-118263000	Active TSS	Spleen	Spleen
35	chr4:118262800-118263400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr4:118267200-118273200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr4:118272600-118272800	Active TSS	NH-A	brain
38	chr4:118273200-118274200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr4:118274200-118274800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr4:118274800-118275200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr4:118275200-118277200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr4:118276800-118277200	Enhancers	iPS-18 Cell Line	embryonic stem cell
43	chr4:118277200-118278600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr4:118277800-118280000	Weak transcription	HSMMtube	muscle
45	chr4:118278600-118279400	Strong transcription	HMEC	breast
46	chr4:118278600-118282800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr4:118278800-118279000	Enhancers	NHEK	skin
48	chr4:118278800-118279200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr4:118278800-118279800	Enhancers	Fetal Lung	lung
50	chr4:118279400-118281200	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links