Variant report

Variant	nsv1005458
Chromosome Location	chr4:86974515-86991990
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:86974348..86976679-chr4:86978244..86980026,2	MCF-7	breast:
2	chr4:86974348..86976679-chr4:86978244..86980026,2	MCF-7	breast:

Extended variants
information (count: 540 )
Associated
traits (count: 77 )

Variant overlapped rSNPs/rCNVs (count:540 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs17011339	chr4:86974515-86974516	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs189321038	chr4:86974525-86974526	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs546070789	chr4:86974566-86974567	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs528334890	chr4:86974601-86974602	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs141833157	chr4:86974603-86974604	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs77942634	chr4:86974712-86974713	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs112402275	chr4:86974745-86974746	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs568194409	chr4:86974782-86974783	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs3822037	chr4:86974813-86974814	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs550615497	chr4:86974833-86974834	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs531964869	chr4:86974912-86974913	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs116700943	chr4:86974926-86974927	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs35971482	chr4:86974929-86974930	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs558385083	chr4:86974961-86974962	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs567050980	chr4:86975032-86975033	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs17011341	chr4:86975062-86975063	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs555666615	chr4:86975135-86975136	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs370045151	chr4:86975148-86975149	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs181668215	chr4:86975222-86975223	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs186545328	chr4:86975234-86975235	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs72988054	chr4:86975266-86975267	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs577568772	chr4:86975323-86975324	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs182952882	chr4:86975335-86975336	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs186201262	chr4:86975346-86975347	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs189658008	chr4:86975355-86975356	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs76313225	chr4:86975376-86975377	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs115865469	chr4:86975384-86975385	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs13103374	chr4:86975414-86975415	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs550658453	chr4:86975504-86975505	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs117469860	chr4:86975505-86975506	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs79737454	chr4:86975509-86975510	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs72662012	chr4:86975514-86975515	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs567188645	chr4:86975548-86975549	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs534205822	chr4:86975559-86975560	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs145523097	chr4:86975560-86975561	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs201005917	chr4:86975627-86975628	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs115266516	chr4:86975639-86975640	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs539698595	chr4:86975779-86975780	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs138823940	chr4:86975784-86975785	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs182093934	chr4:86975801-86975802	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs141906934	chr4:86975840-86975841	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs553625029	chr4:86975842-86975843	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs60270707	chr4:86975845-86975846	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs150852901	chr4:86975855-86975856	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs139299996	chr4:86975874-86975875	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs534319635	chr4:86975888-86975889	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs540117413	chr4:86975987-86975988	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs557774125	chr4:86976081-86976082	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs149622742	chr4:86976135-86976136	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs544418863	chr4:86976138-86976139	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:77)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
lymphocytic leukemia	21291569	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Parkinson disease	21956041	CNVD
Mental retardation	20522426	CNVD
delayed speech	20522426	CNVD
growth disorder	20522426	CNVD
Hepatocellular carcinoma	16750200	CNVD
Myxofibrosarcoma	16751306	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Parkinson disease	18923514	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Cancer	21183584	CNVD
Breast cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21785460	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Myelodysplastic syndrome	21251322	CNVD
Multiple myeloma	17550852	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Autism	18414403	CNVD
primary effusion lymphomas	17116491	CNVD
Olfactory neuroblastoma	18408657	CNVD
small cell lung cancer	20016488	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Colorectal cancer	20459617	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86916800-86985400	Weak transcription	Ovary	ovary
2	chr4:86936000-86975600	Weak transcription	Brain Germinal Matrix	brain
3	chr4:86936400-86990600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:86949200-86988600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr4:86955000-86985000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr4:86955200-87003800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:86958200-86975600	Weak transcription	Fetal Brain Female	brain
8	chr4:86958400-86992600	Weak transcription	Fetal Kidney	kidney
9	chr4:86961200-86979400	Weak transcription	Fetal Stomach	stomach
10	chr4:86961200-86981000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr4:86963600-86988800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:86965200-86976200	Weak transcription	Brain Anterior Caudate	brain
13	chr4:86965200-86985800	Weak transcription	Adipose Nuclei	Adipose
14	chr4:86965200-86987000	Weak transcription	Brain Substantia Nigra	brain
15	chr4:86970000-86988400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:86970200-86977000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr4:86970400-86975400	Weak transcription	NHDF-Ad	bronchial
18	chr4:86970400-86975600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr4:86970800-86978000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr4:86971800-87003800	Weak transcription	Brain Hippocampus Middle	brain
21	chr4:86972000-86975600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr4:86972200-86977000	Weak transcription	NHEK	skin
23	chr4:86975200-86976800	Enhancers	Fetal Brain Male	brain
24	chr4:86975200-87003600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr4:86975400-86976400	Enhancers	HSMMtube	muscle
26	chr4:86975400-86977800	Enhancers	NHDF-Ad	bronchial
27	chr4:86975600-86976200	Enhancers	Brain Germinal Matrix	brain
28	chr4:86975600-86976400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr4:86975600-86976400	Enhancers	Fetal Brain Female	brain
30	chr4:86975600-86977800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr4:86976000-86984200	Weak transcription	Brain Cingulate Gyrus	brain
32	chr4:86976200-86976800	Enhancers	Brain Anterior Caudate	brain
33	chr4:86976200-86987800	Weak transcription	Brain Germinal Matrix	brain
34	chr4:86976400-86977600	Weak transcription	HSMMtube	muscle
35	chr4:86976400-87000200	Weak transcription	Fetal Brain Female	brain
36	chr4:86976800-86977200	Weak transcription	Brain Anterior Caudate	brain
37	chr4:86976800-86977600	Enhancers	HUVEC	blood vessel
38	chr4:86976800-86986400	Weak transcription	Fetal Brain Male	brain
39	chr4:86977000-86977400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr4:86977000-86977600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr4:86977000-86977600	Enhancers	Muscle Satellite Cultured Cells	--
42	chr4:86977000-86977600	Enhancers	NHEK	skin
43	chr4:86977200-86977400	Enhancers	Brain Anterior Caudate	brain
44	chr4:86977200-86977400	Enhancers	A549	lung
45	chr4:86977400-87003800	Weak transcription	Brain Anterior Caudate	brain
46	chr4:86977600-86977800	Enhancers	HSMMtube	muscle
47	chr4:86977800-86979000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr4:86978000-86978800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr4:86978800-86988800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr4:86979000-86979200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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