Variant report

Variant	rs138823940
Chromosome Location	chr4:86975784-86975785
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:86974348..86976679-chr4:86978244..86980026,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009622	chr4:86893536-87119153	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003585	chr4:86957967-87250436	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv998531	chr4:86966103-86980077	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv511259	chr4:86966327-86983232	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1004688	chr4:86970230-86983232	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1005458	chr4:86974515-86991990	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv594757	chr4:86975062-86979252	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv594758	chr4:86975062-86979848	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3692828	chr4:86975062-86979927	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv594759	chr4:86975062-86979927	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv2763854	chr4:86975062-86983232	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv517318	chr4:86975062-86990027	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv2760917	chr4:86975062-87000221	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3490301	chr4:86975278-86981026	Enhancers Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3490298	chr4:86975678-86980951	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86916800-86985400	Weak transcription	Ovary	ovary
2	chr4:86936400-86990600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:86949200-86988600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:86955000-86985000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr4:86955200-87003800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr4:86958400-86992600	Weak transcription	Fetal Kidney	kidney
7	chr4:86961200-86979400	Weak transcription	Fetal Stomach	stomach
8	chr4:86961200-86981000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr4:86963600-86988800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:86965200-86976200	Weak transcription	Brain Anterior Caudate	brain
11	chr4:86965200-86985800	Weak transcription	Adipose Nuclei	Adipose
12	chr4:86965200-86987000	Weak transcription	Brain Substantia Nigra	brain
13	chr4:86970000-86988400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:86970200-86977000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr4:86970800-86978000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr4:86971800-87003800	Weak transcription	Brain Hippocampus Middle	brain
17	chr4:86972200-86977000	Weak transcription	NHEK	skin
18	chr4:86975200-86976800	Enhancers	Fetal Brain Male	brain
19	chr4:86975200-87003600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr4:86975400-86976400	Enhancers	HSMMtube	muscle
21	chr4:86975400-86977800	Enhancers	NHDF-Ad	bronchial
22	chr4:86975600-86976200	Enhancers	Brain Germinal Matrix	brain
23	chr4:86975600-86976400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr4:86975600-86976400	Enhancers	Fetal Brain Female	brain
25	chr4:86975600-86977800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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