Variant report

Variant	nsv1008877
Chromosome Location	chr1:85843238-85897570
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:434)
CpG islands
(count:307)
Chromatin interactive
region (count:13)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:434 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr1:85851934-85852090	HepG2	liver:	n/a	n/a
2	ARID3A	chr1:85872867-85873214	HepG2	liver:	n/a	n/a
3	ATF2	chr1:85877016-85877470	H1-hESC	embryonic stem cell:	n/a	n/a
4	CBX3	chr1:85872768-85873303	HCT-116	colon:	n/a	n/a
5	CEBPB	chr1:85844925-85845289	HepG2	liver:	n/a	n/a
6	CEBPB	chr1:85859870-85860153	K562	blood:	n/a	chr1:85860029-85860040
7	CEBPB	chr1:85877439-85877635	H1-hESC	embryonic stem cell:	n/a	n/a
8	CEBPB	chr1:85859860-85860177	A549	lung:	n/a	chr1:85860029-85860040
9	CEBPB	chr1:85862972-85863533	IMR90	lung:	n/a	chr1:85863347-85863358
10	CEBPB	chr1:85859852-85860208	H1-hESC	embryonic stem cell:	n/a	chr1:85860029-85860040
11	CEBPB	chr1:85859858-85860184	IMR90	lung:	n/a	chr1:85860029-85860040
12	CEBPB	chr1:85844997-85845229	Hela-S3	cervix:	n/a	n/a
13	CEBPB	chr1:85859999-85860129	Hela-S3	cervix:	n/a	chr1:85860029-85860040
14	CEBPB	chr1:85844923-85845271	A549	lung:	n/a	n/a
15	CEBPB	chr1:85845091-85845209	K562	blood:	n/a	n/a
16	CEBPB	chr1:85863216-85863530	HepG2	liver:	n/a	chr1:85863347-85863358
17	CEBPB	chr1:85844914-85845516	IMR90	lung:	n/a	n/a
18	CEBPB	chr1:85886942-85887145	IMR90	lung:	n/a	n/a
19	CEBPB	chr1:85859862-85860199	HepG2	liver:	n/a	chr1:85860029-85860040
20	CEBPB	chr1:85863340-85863379	K562	blood:	n/a	chr1:85863347-85863358
21	CEBPB	chr1:85864308-85864682	A549	lung:	n/a	n/a
22	CEBPB	chr1:85864326-85864593	HepG2	liver:	n/a	n/a
23	CEBPB	chr1:85863396-85863507	A549	lung:	n/a	n/a
24	CEBPB	chr1:85864339-85864722	Hela-S3	cervix:	n/a	n/a
25	CEBPB	chr1:85864308-85864682	IMR90	lung:	n/a	n/a
26	CEBPB	chr1:85864383-85864742	A549	lung:	n/a	n/a
27	CTCF	chr1:85864520-85864670	HPAF	blood vessel:	n/a	n/a
28	CTCF	chr1:85864480-85864630	HPF	lung:	n/a	n/a
29	CTCF	chr1:85864500-85864650	AG09309	skin:	n/a	n/a
30	CTCF	chr1:85864560-85864710	HEEpiC	esophagus:	n/a	n/a
31	CTCF	chr1:85864480-85864630	RPTEC	kidney:	n/a	n/a
32	CTCF	chr1:85882872-85883021	MCF-7	breast:	n/a	chr1:85882917-85882935 chr1:85882942-85882960 chr1:85882944-85882957
33	CTCF	chr1:85864540-85864690	HCM	heart:	n/a	n/a
34	CTCF	chr1:85864412-85864734	A549	lung:	n/a	n/a
35	CTCF	chr1:85864460-85864610	BE2_C	brain:	n/a	n/a
36	CTCF	chr1:85864272-85864887	HCT-116	colon:	n/a	n/a
37	CTCF	chr1:85864420-85864570	HMEC	breast:	n/a	n/a
38	CTCF	chr1:85864480-85864630	Caco-2	colon:	n/a	n/a
39	CTCF	chr1:85864440-85864703	H1-hESC	embryonic stem cell:	n/a	n/a
40	CTCF	chr1:85864523-85864633	Medullo	brain:	n/a	n/a
41	CTCF	chr1:85882860-85883010	HUVEC	blood vessel:	n/a	chr1:85882917-85882935 chr1:85882942-85882960 chr1:85882944-85882957
42	CTCF	chr1:85864387-85864758	IMR90	lung:	n/a	n/a
43	CTCF	chr1:85882917-85882983	MCF-7	breast:	n/a	chr1:85882917-85882935 chr1:85882942-85882960 chr1:85882944-85882957
44	CTCF	chr1:85864500-85864650	HEEpiC	esophagus:	n/a	n/a
45	CTCF	chr1:85864520-85864670	SAEC	small airway:	n/a	n/a
46	CTCF	chr1:85864521-85864646	K562	blood:	n/a	n/a
47	CTCF	chr1:85864440-85864590	Caco-2	colon:	n/a	n/a
48	CTCF	chr1:85864500-85864650	SK-N-SH_RA	brain:	n/a	n/a
49	CTCF	chr1:85864460-85864610	GM12873	blood:	n/a	n/a
50	CTCF	chr1:85864440-85864590	GM12874	blood:	n/a	n/a

(count:307 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:85845101-85845151	A549	lung:	n/a
2	chr1:85877412-85877462	T-47D	breast:	n/a
3	chr1:85845101-85845151	A549	lung:	n/a
4	chr1:85877412-85877462	T-47D	breast:	n/a
5	chr1:85845101-85845151	NH-A	brain:	n/a
6	chr1:85864304-85864354	Hela-S3	cervix:	n/a
7	chr1:85864304-85864354	HEK293	kidney:	embryo
8	chr1:85872804-85872854	AG09319	gingival:	n/a
9	chr1:85883665-85883715	LNCaP	prostate:	n/a
10	chr1:85864304-85864354	Jurkat	blood:	n/a
11	chr1:85883665-85883715	GM06990	blood:	n/a
12	chr1:85864304-85864354	GM12891	blood:	n/a
13	chr1:85883665-85883715	AG04450	lung:	fetal
14	chr1:85872804-85872854	U87	brain:	n/a
15	chr1:85845101-85845151	HEK293	kidney:	embryo
16	chr1:85877412-85877462	HRE	kidney:	n/a
17	chr1:85864304-85864354	HRE	kidney:	n/a
18	chr1:85877412-85877462	SK-N-MC	brain:	n/a
19	chr1:85845101-85845151	Hela-S3	cervix:	n/a
20	chr1:85877412-85877462	MCF-7	breast:	n/a
21	chr1:85877412-85877462	HRCEpiC	kidney:	n/a
22	chr1:85864304-85864354	NH-A	brain:	n/a
23	chr1:85877412-85877462	HCPEpiC	choroid plexus:	n/a
24	chr1:85872804-85872854	HCPEpiC	choroid plexus:	n/a
25	chr1:85864304-85864354	MCF10A-Er-Src	breast:	n/a
26	chr1:85845101-85845151	GM19239	blood:	n/a
27	chr1:85877412-85877462	ovcar-3	ovarian:	n/a
28	chr1:85845101-85845151	IMR90	lung:	fetal
29	chr1:85845101-85845151	GM06990	blood:	n/a
30	chr1:85877412-85877462	HUVEC	blood vessel:	n/a
31	chr1:85872804-85872854	MCF10A-Er-Src	breast:	n/a
32	chr1:85845101-85845151	HRPEpiC	eye:	n/a
33	chr1:85877412-85877462	HRPEpiC	eye:	n/a
34	chr1:85872804-85872854	AG10803	skin:	n/a
35	chr1:85877412-85877462	BE2_C	brain:	n/a
36	chr1:85864304-85864354	IMR90	lung:	fetal
37	chr1:85845101-85845151	SK-N-MC	brain:	n/a
38	chr1:85883665-85883715	ProgFib	skin:	n/a
39	chr1:85877412-85877462	HPAEpiC	pulmonary alveolar:	n/a
40	chr1:85845101-85845151	T-47D	breast:	n/a
41	chr1:85883665-85883715	Hela-S3	cervix:	n/a
42	chr1:85883665-85883715	Hepatocyte	liver:	n/a
43	chr1:85845101-85845151	HRE	kidney:	n/a
44	chr1:85877412-85877462	H1-hESC	embryonic stem cell:	embryo
45	chr1:85883665-85883715	SKMC	muscle:	n/a
46	chr1:85864304-85864354	NT2-D1	testis:	n/a
47	chr1:85883665-85883715	NHDF-neo	bronchial:	n/a
48	chr1:85877412-85877462	A549	lung:	n/a
49	chr1:85877412-85877462	U87	brain:	n/a
50	chr1:85845101-85845151	Caco-2	colon:	n/a

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:85773623..85774572-chr1:85864125..85865314,5	MCF-7	breast:
2	chr1:85866495..85869056-chr1:86046414..86047968,2	K562	blood:
3	chr1:85809642..85811064-chr1:85864019..85865015,8	MCF-7	breast:
4	chr1:85846114..85848422-chr1:86044921..86046883,2	MCF-7	breast:
5	chr1:85872823..85874492-chr1:85874813..85877121,2	MCF-7	breast:
6	chr1:85875979..85878822-chr1:85889098..85890895,2	K562	blood:
7	chr1:85843890..85846384-chr1:85930341..85931976,2	MCF-7	breast:
8	chr1:85839536..85841245-chr1:85843364..85846261,2	K562	blood:
9	chr1:85839312..85843099-chr1:85847023..85851233,3	K562	blood:
10	chr1:85863358..85866240-chr1:85910699..85913658,2	K562	blood:
11	chr1:85839315..85841036-chr1:85844742..85846261,2	K562	blood:
12	chr1:85872823..85874492-chr1:85874813..85877121,2	MCF-7	breast:
13	chr1:85875979..85878822-chr1:85889098..85890895,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CYR61-3	chr1:85864140-85865646	ENSG00000223653
2	lnc-CYR61-3	chr1:85846057-85846248	ENSG00000223653

No data

Variant related genes	Relation type
DDAH1	TF binding region
DDAH1	CpG island
ENSG00000142871	chromatin interactions
ENSG00000153904	chromatin interactions
GEN1	miRNA target sites
PLEKHF2	miRNA target sites

Extended variants
information (count: 1854 )
Associated
traits (count: 95 )

Variant overlapped rSNPs/rCNVs (count:1854 , 50 per page) page: 1 2 3 4 5 6 7 ... 38

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs41438644	chr1:85843238-85843239	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs61473029	chr1:85843309-85843310	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs185120943	chr1:85843390-85843391	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs78200919	chr1:85843395-85843396	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs557860774	chr1:85843402-85843403	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs532080903	chr1:85843403-85843404	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs548244189	chr1:85843408-85843409	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs541104648	chr1:85843426-85843427	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs568476282	chr1:85843541-85843542	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs527755774	chr1:85843551-85843552	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs145490251	chr1:85843583-85843584	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs12060720	chr1:85843589-85843590	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs148824471	chr1:85843604-85843605	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs77284038	chr1:85843609-85843610	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs11808537	chr1:85843612-85843613	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs556370035	chr1:85843630-85843631	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs569803444	chr1:85843638-85843639	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs535748386	chr1:85843657-85843658	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs189878038	chr1:85843681-85843682	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs571731369	chr1:85843692-85843693	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs147977674	chr1:85843748-85843749	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs75140285	chr1:85843762-85843763	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs72722697	chr1:85843863-85843864	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs552355846	chr1:85843881-85843882	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs546080898	chr1:85843903-85843904	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs563103849	chr1:85843906-85843907	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs559566284	chr1:85843939-85843940	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs545755544	chr1:85843974-85843975	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs531871403	chr1:85843978-85843979	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs542527225	chr1:85844028-85844029	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs562393743	chr1:85844039-85844040	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs564216330	chr1:85844043-85844044	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs547849997	chr1:85844054-85844055	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs564566048	chr1:85844060-85844061	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs34102729	chr1:85844068-85844069	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs548427027	chr1:85844070-85844071	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs549669671	chr1:85844107-85844108	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs142658237	chr1:85844118-85844119	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs182124054	chr1:85844306-85844307	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs2064510	chr1:85844330-85844331	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs188912765	chr1:85844343-85844344	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs534309693	chr1:85844379-85844380	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs193219122	chr1:85844409-85844410	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs577622432	chr1:85844483-85844484	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs537160707	chr1:85844548-85844549	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs729655	chr1:85844617-85844618	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs576554867	chr1:85844657-85844658	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs542474944	chr1:85844668-85844669	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs2011825	chr1:85844671-85844672	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs572819968	chr1:85844675-85844676	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:95)

Disease	PMID	Source
Colorectal cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Wilms tumour	21544195	CNVD
Coronary Disease	20032323	CNVD
Prostate cancer	21965145	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Stargardt''s disease	17277736	CNVD
Neuroblastoma	17897457	CNVD
Uveal melanoma	21693616	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-syndromic sensorineural hearing loss	22290220	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	21264507	CNVD
Acute myeloid leukemia	16864856	CNVD
Astrocytoma	17387387	CNVD
Cancer	21499728	CNVD
Glioblastoma multiforme	17387387	CNVD
Oligodendroglial tumors	17285580	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Neuroblastoma	17535989	CNVD
Pheochromocytoma	17535989	CNVD
Prostate cancer	16705090	CNVD
Astrocytoma	17934521	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Neuroblastoma	17533364	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Autism	22495311	CNVD
Non-small cell lung cancer	21385341	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Chordoma	21602918	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Melanoma	18172304	CNVD
Multiple myeloma	16461302	CNVD
Cancer	21129771	CNVD
Autosomal dominant nocturnal frontal lobe epilepsy	18472482	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-small cell lung cancer	20864512	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Thrombocytopenia-absent radius syndrome	21933853	CNVD
Psychiatric disorder	22848183	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	20409316	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17393978	CNVD
Cervical cancer	21062161	CNVD
Cancer	21183584	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21364760	CNVD
Rett syndrome	21593744	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16608533	CNVD
Ovarian cancer	21720365	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Ewing''s sarcoma	17952124	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Cancer	22429812	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Breast cancer	17133270	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Multiple myeloma	17550852	CNVD
Myelofibrosis	22110671	CNVD
Neuroblastoma	21899760	CNVD
Breast cancer	16397240	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Esophageal adenocarcinoma	18820669	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:880 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85834800-85844200	Weak transcription	Fetal Muscle Leg	muscle
2	chr1:85838600-85843400	Weak transcription	Fetal Brain Female	brain
3	chr1:85839000-85843600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:85839400-85846400	Weak transcription	Small Intestine	intestine
5	chr1:85839800-85864200	Weak transcription	Aorta	Aorta
6	chr1:85840000-85844200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr1:85840000-85844200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr1:85840000-85844800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:85840000-85844800	Weak transcription	Ovary	ovary
10	chr1:85840000-85845200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr1:85840200-85844400	Weak transcription	HSMMtube	muscle
12	chr1:85840200-85844800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr1:85840200-85844800	Weak transcription	Fetal Stomach	stomach
14	chr1:85840200-85845200	Weak transcription	HepG2	liver
15	chr1:85840200-85845400	Weak transcription	NHLF	lung
16	chr1:85840200-85845600	Weak transcription	Psoas Muscle	Psoas
17	chr1:85840400-85845200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr1:85840400-85845200	Weak transcription	HSMM	muscle
19	chr1:85840400-85845400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr1:85840400-85848000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr1:85841200-85851400	Weak transcription	Pancreas	Pancrea
22	chr1:85841200-85859800	Weak transcription	NH-A	brain
23	chr1:85841600-85844800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr1:85841800-85844800	Weak transcription	Brain Anterior Caudate	brain
25	chr1:85841800-85845000	Weak transcription	Fetal Intestine Small	intestine
26	chr1:85841800-85848000	Weak transcription	NHDF-Ad	bronchial
27	chr1:85842000-85844800	Weak transcription	Liver	Liver
28	chr1:85842000-85845200	Weak transcription	Fetal Lung	lung
29	chr1:85842000-85850800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr1:85842400-85845000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr1:85842400-85845400	Weak transcription	Fetal Kidney	kidney
32	chr1:85842400-85847200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr1:85842600-85843600	Enhancers	Fetal Brain Male	brain
34	chr1:85842600-85844200	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr1:85842600-85846000	Weak transcription	Colon Smooth Muscle	Colon
36	chr1:85842600-85847800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr1:85842800-85847200	Weak transcription	Rectal Smooth Muscle	rectum
38	chr1:85842800-85847600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr1:85843000-85845200	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr1:85843200-85845000	Weak transcription	Osteobl	bone
41	chr1:85843400-85843600	Enhancers	Fetal Brain Female	brain
42	chr1:85843600-85844800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr1:85844200-85844600	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr1:85844200-85845200	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr1:85844200-85845400	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr1:85844200-85845800	Enhancers	Fetal Muscle Leg	muscle
47	chr1:85844400-85845000	Enhancers	HSMMtube	muscle
48	chr1:85844800-85845400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr1:85844800-85845400	Enhancers	Duodenum Smooth Muscle	Duodenum
50	chr1:85844800-85845600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links