Variant report

Variant	nsv1010818
Chromosome Location	chr3:103357107-103393929
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZPLD1-10	chr3:103366208-103366374	l_2421_chr3:103365266-103366374_testes
2	lnc-ZPLD1-10	chr3:103365267-103365509	l_2421_chr3:103365266-103366374_testes

Extended variants
information (count: 551 )
Associated
traits (count: 59 )

Variant overlapped rSNPs/rCNVs (count:551 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs562610476	chr3:103365272-103365273	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs186998422	chr3:103365274-103365275	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs569608715	chr3:103365315-103365316	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs207463424	chr3:103365337-103365338	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs115400452	chr3:103365342-103365343	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs192081269	chr3:103365417-103365418	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs114428572	chr3:103365461-103365462	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs114290376	chr3:103365487-103365488	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs548223801	chr3:103366215-103366216	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs535798604	chr3:103366238-103366239	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs142970512	chr3:103366247-103366248	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs138636421	chr3:103366325-103366326	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs10511214	chr3:103366343-103366344	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs552350103	chr3:103366346-103366347	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs115147679	chr3:103366347-103366348	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs558643857	chr3:103366370-103366371	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs6801589	chr3:103368210-103368211	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs558357930	chr3:103368214-103368215	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs187285284	chr3:103368217-103368218	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs191756525	chr3:103368224-103368225	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs555445384	chr3:103368234-103368235	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs573545765	chr3:103368238-103368239	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs566119453	chr3:103368268-103368269	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs6765506	chr3:103368269-103368270	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs555988163	chr3:103368289-103368290	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs577637512	chr3:103368294-103368295	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs146308823	chr3:103368311-103368312	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs558755951	chr3:103368346-103368347	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs145663211	chr3:103373620-103373621	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs371103577	chr3:103373629-103373630	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs557826245	chr3:103373641-103373642	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs572870861	chr3:103373656-103373657	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs184733302	chr3:103373671-103373672	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs555176444	chr3:103373680-103373681	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs12630575	chr3:103373711-103373712	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs568582033	chr3:103373713-103373714	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs544108495	chr3:103373755-103373756	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs189253533	chr3:103373771-103373772	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs115946080	chr3:103373778-103373779	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs59057365	chr3:103373787-103373788	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs74664603	chr3:103373792-103373793	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs528486091	chr3:103373813-103373814	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs546938687	chr3:103373819-103373820	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs58154386	chr3:103373848-103373849	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs558201847	chr3:103373850-103373851	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs563838326	chr3:103373879-103373880	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs141009933	chr3:103373906-103373907	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs374383072	chr3:103373917-103373918	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs574750523	chr3:103373940-103373941	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs145073659	chr3:103373976-103373977	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:59)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Neurodevelopmental disorder	22521361	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
microdeletion syndrome	22180640	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
small cell lung cancer	20016488	CNVD
Ductal carcinoma	22052326	CNVD
Breast cancer	16608533	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Myelofibrosis	22110671	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21364760	CNVD
Breast cancer	22522925	CNVD
Developmental delay	22180640	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:103368200-103368400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:103373600-103375800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:103374400-103375400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr3:103383600-103383800	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr3:103383800-103395000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr3:103388200-103388600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr3:103391400-103391800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:103393400-103393800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:103393600-103393800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:103393800-103409000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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