Variant report
| Variant | rs10511214 |
|---|---|
| Chromosome Location | chr3:103366343-103366344 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-ZPLD1-10 | chr3:103366208-103366374 | l_2421_chr3:103365266-103366374_testes |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10511217 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs10937556 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12485744 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12487437 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12488655 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12495365 | 0.85[EUR][1000 genomes] |
| rs12633045 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs1511641 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs1511642 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs1511643 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs16846601 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2175470 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs58084571 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs60179750 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs6441758 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs72960180 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72960187 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72962113 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7651536 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948426 | chr3:103046716-103952548 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv949251 | chr3:103046716-103977037 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv527886 | chr3:103048891-103989893 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| 4 | esv2757882 | chr3:103256253-103421162 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | esv2759165 | chr3:103256253-103421162 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv1010818 | chr3:103357107-103393929 | ZNF genes & repeats Enhancers Weak transcription Active TSS | lncRNA | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
