Variant report

Variant	nsv1011014
Chromosome Location	chr2:37027819-37095895
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:468)
CpG islands
(count:671)
Chromatin interactive
region (count:39)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:2)

(count:468 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr2:37085943-37086690	HepG2	liver:	n/a	n/a
2	ARID3A	chr2:37046300-37046538	HepG2	liver:	n/a	n/a
3	BATF	chr2:37028268-37028554	GM12878	blood:	n/a	n/a
4	BATF	chr2:37032793-37033069	GM12878	blood:	n/a	n/a
5	BATF	chr2:37085647-37086223	GM12878	blood:	n/a	n/a
6	BATF	chr2:37032861-37033028	GM12878	blood:	n/a	n/a
7	BATF	chr2:37085614-37086030	GM12878	blood:	n/a	n/a
8	BATF	chr2:37028243-37028573	GM12878	blood:	n/a	n/a
9	BHLHE40	chr2:37085805-37086219	GM12878	blood:	n/a	n/a
10	CCNT2	chr2:37095797-37095899	K562	blood:	n/a	n/a
11	CEBPB	chr2:37076410-37076778	A549	lung:	n/a	chr2:37076591-37076602
12	CEBPB	chr2:37083205-37083311	H1-hESC	embryonic stem cell:	n/a	chr2:37083249-37083260
13	CEBPB	chr2:37076424-37076775	K562	blood:	n/a	chr2:37076591-37076602
14	CEBPB	chr2:37083111-37083424	HepG2	liver:	n/a	chr2:37083249-37083260
15	CEBPB	chr2:37087867-37087986	HepG2	liver:	n/a	chr2:37087939-37087950
16	CEBPB	chr2:37080365-37080533	HepG2	liver:	n/a	chr2:37080443-37080454
17	CEBPB	chr2:37076415-37076767	HepG2	liver:	n/a	chr2:37076591-37076602
18	CEBPB	chr2:37083150-37083407	IMR90	lung:	n/a	chr2:37083249-37083260
19	CEBPB	chr2:37076514-37076754	H1-hESC	embryonic stem cell:	n/a	chr2:37076591-37076602
20	CEBPB	chr2:37083147-37083378	A549	lung:	n/a	chr2:37083249-37083260
21	CEBPB	chr2:37076417-37076769	IMR90	lung:	n/a	chr2:37076591-37076602
22	CHD1	chr2:37051473-37051475	H1-hESC	embryonic stem cell:	n/a	n/a
23	CHD2	chr2:37039443-37039715	H1-hESC	embryonic stem cell:	n/a	chr2:37039457-37039467
24	CHD2	chr2:37051405-37051727	H1-hESC	embryonic stem cell:	n/a	n/a
25	CHD2	chr2:37085596-37086176	GM12878	blood:	n/a	n/a
26	CTCF	chr2:37039720-37039870	BE2_C	brain:	n/a	n/a
27	CTCF	chr2:37046586-37046702	GM12878	blood:	n/a	n/a
28	CTCF	chr2:37038260-37038410	HepG2	liver:	n/a	n/a
29	CTCF	chr2:37039355-37039651	K562	blood:	n/a	chr2:37039539-37039560 chr2:37039537-37039555 chr2:37039540-37039553
30	CTCF	chr2:37039500-37039650	HCPEpiC	choroid plexus:	n/a	chr2:37039539-37039560 chr2:37039537-37039555 chr2:37039540-37039553
31	CTCF	chr2:37039540-37039690	HRE	kidney:	n/a	chr2:37039540-37039553
32	CTCF	chr2:37084925-37085216	MCF-7	breast:	n/a	n/a
33	CTCF	chr2:37046580-37046730	HMEC	breast:	n/a	n/a
34	CTCF	chr2:37039100-37039250	HCT-116	colon:	n/a	n/a
35	CTCF	chr2:37039500-37039650	AG10803	skin:	n/a	chr2:37039539-37039560 chr2:37039537-37039555 chr2:37039540-37039553
36	CTCF	chr2:37046457-37046779	H1-hESC	embryonic stem cell:	n/a	n/a
37	CTCF	chr2:37039400-37039550	HCM	heart:	n/a	n/a
38	CTCF	chr2:37039331-37039725	H1-hESC	embryonic stem cell:	n/a	chr2:37039539-37039560 chr2:37039537-37039555 chr2:37039540-37039553
39	CTCF	chr2:37039440-37039590	HCT-116	colon:	n/a	chr2:37039539-37039560 chr2:37039537-37039555 chr2:37039540-37039553
40	CTCF	chr2:37039620-37039770	HFF	foreskin:	n/a	n/a
41	CTCF	chr2:37046559-37046763	K562	blood:	n/a	n/a
42	CTCF	chr2:37039460-37039610	GM12866	blood:	n/a	chr2:37039539-37039560 chr2:37039537-37039555 chr2:37039540-37039553
43	CTCF	chr2:37046540-37046690	HepG2	liver:	n/a	n/a
44	CTCF	chr2:37039460-37039610	AoAF	blood vessel:	n/a	chr2:37039539-37039560 chr2:37039537-37039555 chr2:37039540-37039553
45	CTCF	chr2:37039380-37039530	GM12867	blood:	n/a	n/a
46	CTCF	chr2:37039440-37039590	GM12868	blood:	n/a	chr2:37039539-37039560 chr2:37039537-37039555 chr2:37039540-37039553
47	CTCF	chr2:37039440-37039590	HPF	lung:	n/a	chr2:37039539-37039560 chr2:37039537-37039555 chr2:37039540-37039553
48	CTCF	chr2:37039435-37039704	K562	blood:	n/a	chr2:37039539-37039560 chr2:37039537-37039555 chr2:37039540-37039553
49	CTCF	chr2:37039500-37039650	MCF-7	breast:	n/a	chr2:37039539-37039560 chr2:37039537-37039555 chr2:37039540-37039553
50	CTCF	chr2:37039460-37039660	HUVEC	blood vessel:	n/a	chr2:37039539-37039560 chr2:37039537-37039555 chr2:37039540-37039553

(count:671 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr2:37070005-37070055	RPTEC	kidney:	n/a
2	chr2:37041582-37041632	LNCaP	prostate:	n/a
3	chr2:37039119-37039169	AG10803	skin:	n/a
4	chr2:37035650-37035700	NHDF-neo	bronchial:	n/a
5	chr2:37032102-37032152	Hela-S3	cervix:	n/a
6	chr2:37041582-37041632	HRCEpiC	kidney:	n/a
7	chr2:37075592-37075642	GM12891	blood:	n/a
8	chr2:37075592-37075642	GM06990	blood:	n/a
9	chr2:37032102-37032152	AG04449	skin:	fetal
10	chr2:37035650-37035700	Hepatocyte	liver:	n/a
11	chr2:37061797-37061847	AG04449	skin:	fetal
12	chr2:37070005-37070055	HPAEpiC	pulmonary alveolar:	n/a
13	chr2:37075592-37075642	MCF-7	breast:	n/a
14	chr2:37035865-37035915	MCF-7	breast:	n/a
15	chr2:37070005-37070055	LNCaP	prostate:	n/a
16	chr2:37035539-37035589	NHDF-neo	bronchial:	n/a
17	chr2:37041582-37041632	ProgFib	skin:	n/a
18	chr2:37035539-37035589	HepG2	liver:	n/a
19	chr2:37061797-37061847	GM12892	blood:	n/a
20	chr2:37041582-37041632	AG10803	skin:	n/a
21	chr2:37035865-37035915	HEK293	kidney:	embryo
22	chr2:37035865-37035915	HNPCEpiC	eye:	n/a
23	chr2:37070005-37070055	BJ	skin:	n/a
24	chr2:37035539-37035589	SK-N-SH_RA	brain:	n/a
25	chr2:37035650-37035700	HPAEpiC	pulmonary alveolar:	n/a
26	chr2:37035707-37035757	T-47D	breast:	n/a
27	chr2:37035650-37035700	ProgFib	skin:	n/a
28	chr2:37039119-37039169	IMR90	lung:	fetal
29	chr2:37039119-37039169	H1-hESC	embryonic stem cell:	embryo
30	chr2:37075592-37075642	HCPEpiC	choroid plexus:	n/a
31	chr2:37061797-37061847	HUVEC	blood vessel:	n/a
32	chr2:37035809-37035859	Hepatocyte	liver:	n/a
33	chr2:37035809-37035859	Hela-S3	cervix:	n/a
34	chr2:37039119-37039169	T-47D	breast:	n/a
35	chr2:37039119-37039169	HEK293	kidney:	embryo
36	chr2:37039119-37039169	PFSK-1	brain:	n/a
37	chr2:37035865-37035915	GM12878	blood:	n/a
38	chr2:37035707-37035757	AoSMC	blood vessel:	n/a
39	chr2:37035865-37035915	H1-hESC	embryonic stem cell:	embryo
40	chr2:37061797-37061847	H1-hESC	embryonic stem cell:	embryo
41	chr2:37035707-37035757	ovcar-3	ovarian:	n/a
42	chr2:37035865-37035915	GM19239	blood:	n/a
43	chr2:37070005-37070055	AG09319	gingival:	n/a
44	chr2:37041582-37041632	U87	brain:	n/a
45	chr2:37035707-37035757	HCM	heart:	n/a
46	chr2:37035539-37035589	ProgFib	skin:	n/a
47	chr2:37035539-37035589	SKMC	muscle:	n/a
48	chr2:37041582-37041632	NHDF-neo	bronchial:	n/a
49	chr2:37035865-37035915	HCF	heart:	n/a
50	chr2:37032102-37032152	PFSK-1	brain:	n/a

(count:39 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:37026211..37031295-chr2:37031745..37037130,6	MCF-7	breast:
2	chr2:37080118..37082736-chr2:37085866..37087782,3	K562	blood:
3	chr2:37048381..37050442-chr2:37052103..37054094,2	MCF-7	breast:
4	chr2:37073507..37075966-chr2:37080375..37082990,2	MCF-7	breast:
5	chr2:37080118..37082736-chr2:37085866..37087782,3	K562	blood:
6	chr2:37038416..37040674-chr2:37042878..37045165,2	MCF-7	breast:
7	chr2:37048381..37050442-chr2:37052103..37054094,2	MCF-7	breast:
8	chr2:37070468..37072403-chr2:37075217..37077956,2	MCF-7	breast:
9	chr2:37073507..37075966-chr2:37080375..37082990,2	MCF-7	breast:
10	chr2:37029593..37034563-chr2:37035958..37037760,4	K562	blood:
11	chr2:37068889..37071543-chr2:37072679..37074601,2	K562	blood:
12	chr2:37053268..37055932-chr2:37062190..37065035,2	MCF-7	breast:
13	chr2:37038445..37041439-chr2:37044172..37046404,2	MCF-7	breast:
14	chr2:37029593..37034563-chr2:37035958..37037760,4	K562	blood:
15	chr2:37080118..37082736-chr2:37085866..37087782,2	K562	blood:
16	chr2:37070518..37072329-chr2:37074111..37076172,2	K562	blood:
17	chr2:37046380..37047296-chr2:37232183..37232895,3	MCF-7	breast:
18	chr2:37047490..37050281-chr2:37192919..37195129,2	K562	blood:
19	chr2:37038416..37040674-chr2:37042878..37045165,2	MCF-7	breast:
20	chr2:37077524..37079091-chr2:37080598..37082395,2	MCF-7	breast:
21	chr2:37070373..37072769-chr2:37080148..37082605,2	K562	blood:
22	chr2:37070373..37072769-chr2:37080148..37082605,2	K562	blood:
23	chr2:37034700..37036255-chr2:37423104..37425586,2	K562	blood:
24	chr2:37045354..37047713-chr2:37230824..37232867,2	MCF-7	breast:
25	chr2:37070518..37072329-chr2:37074111..37076172,2	K562	blood:
26	chr2:37068151..37070389-chr2:37071740..37074179,2	K562	blood:
27	chr2:37026211..37031295-chr2:37031745..37037130,6	MCF-7	breast:
28	chr2:37053268..37055932-chr2:37062190..37065035,2	MCF-7	breast:
29	chr2:37068889..37071543-chr2:37072679..37074601,2	K562	blood:
30	chr2:37080118..37082736-chr2:37085866..37087782,2	K562	blood:
31	chr2:37038445..37041439-chr2:37044172..37046404,2	MCF-7	breast:
32	chr2:37046287..37047005-chr2:37145243..37146052,3	MCF-7	breast:
33	chr2:37083137..37085335-chr2:37192988..37194551,2	MCF-7	breast:
34	chr2:37082616..37084189-chr2:37192203..37194544,2	MCF-7	breast:
35	chr2:37026042..37027658-chr2:37028263..37030381,2	K562	blood:
36	chr2:37087369..37088984-chr2:37161141..37163056,2	K562	blood:
37	chr2:37095568..37097536-chr2:37100134..37102065,2	K562	blood:
38	chr2:37070468..37072403-chr2:37075217..37077956,2	MCF-7	breast:
39	chr2:37077524..37079091-chr2:37080598..37082395,2	MCF-7	breast:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-STRN-1	chr2:37066146-37066788	NONHSAT070091
2	lnc-STRN-1	chr2:37071730-37073048	NONHSAT070091
3	lnc-STRN-1	chr2:37070934-37071545	NONHSAT070091
4	lnc-STRN-1	chr2:37067534-37069337	NONHSAT070091
5	lnc-STRN-1	chr2:37073062-37073286	NONHSAT070091

No data

(count:2 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	STRN	hsa-miR-342-3p	chr2:37073734-37073728
2	STRN	hsa-miR-342-3p	chr2:37071389-37071383

Variant related genes	Relation type
RNU6-577P	TF binding region
ENSG00000268688	TF binding region
RNU6-577P	CpG island
ENSG00000268688	CpG island
ENSG00000138068	chromatin interactions
ENSG00000218739	chromatin interactions
ENSG00000268688	chromatin interactions
ENSG00000115808	chromatin interactions

Extended variants
information (count: 3265 )
Associated
traits (count: 61 )

Variant overlapped rSNPs/rCNVs (count:3265 , 50 per page) page: 1 2 3 4 5 6 7 ... 66

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1558701	chr2:37027819-37027820	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs572963901	chr2:37027829-37027830	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs10198595	chr2:37027866-37027867	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs371614170	chr2:37027891-37027892	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs115904766	chr2:37027897-37027898	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs577334978	chr2:37027900-37027901	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs185940100	chr2:37027915-37027916	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs563213403	chr2:37027921-37027922	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs142209969	chr2:37027943-37027944	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs542484031	chr2:37027983-37027984	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs560539627	chr2:37027992-37027993	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs115775517	chr2:37027996-37027997	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs145927530	chr2:37028057-37028058	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs571006872	chr2:37028061-37028062	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs527301881	chr2:37028067-37028068	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs532021060	chr2:37028110-37028111	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs763724	chr2:37028115-37028116	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs568787375	chr2:37028144-37028145	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs536176094	chr2:37028159-37028160	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs375552393	chr2:37028167-37028168	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs554814085	chr2:37028168-37028169	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs116443697	chr2:37028177-37028178	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs78427726	chr2:37028178-37028179	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs531927198	chr2:37028181-37028182	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs190860580	chr2:37028184-37028185	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs79756319	chr2:37028224-37028225	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs76174323	chr2:37028240-37028241	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs549497288	chr2:37028241-37028242	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs556307133	chr2:37028279-37028280	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs186432721	chr2:37028308-37028309	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs190498067	chr2:37028353-37028354	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs560820363	chr2:37028354-37028355	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs572597944	chr2:37028363-37028364	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs545978059	chr2:37028378-37028379	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs571712079	chr2:37028422-37028423	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs201569082	chr2:37028428-37028429	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs182732112	chr2:37028441-37028442	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs200358317	chr2:37028450-37028451	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs376052209	chr2:37028455-37028456	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs145142505	chr2:37028462-37028463	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs373378679	chr2:37028482-37028483	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs2072527	chr2:37028486-37028487	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs377073906	chr2:37028490-37028491	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs550231530	chr2:37028564-37028565	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs562358995	chr2:37028575-37028576	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs188414667	chr2:37028580-37028581	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs200385489	chr2:37028588-37028589	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs558486845	chr2:37028595-37028596	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs113261898	chr2:37028600-37028601	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs552407434	chr2:37028601-37028602	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:61)

Disease	PMID	Source
Breast cancer	17393978	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17387387	CNVD
Neuroblastoma	17533364	CNVD
Neuroblastoma	18923191	CNVD
Endometrial cancer	22040021	CNVD
Adrenal tumor	17535989	CNVD
Breast cancer	21264507	CNVD
Basal cell lymphoma	17053054	CNVD
Medulloblastoma	17522785	CNVD
Cancer	23418310	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Ependymoma	16718352	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Prostate cancer	18632612	CNVD
Bladder cancer	21909424	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	20505157	CNVD
Autism	17483303	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Medulloblastoma	20607354	CNVD
Leukemia	18628472	CNVD
Autism	19521722	CNVD
Autism	18522746	CNVD
Breast cancer	21364760	CNVD
Wilms tumour	21544195	CNVD
Non-small cell lung cancer	18927303	CNVD
Breast cancer	21785460	CNVD
Lung cancer	18438408	CNVD
Prostate cancer	21965145	CNVD
Breast cancer	16397240	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21508638	CNVD
Neurodevelopmental disorder	22521361	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Melanoma	18172304	CNVD
Cancer	16751803	CNVD
Breast cancer	22737080	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
T-cell lymphomas	22341440	CNVD

Chromatin state (count:1063 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37013000-37033000	Weak transcription	Ovary	ovary
2	chr2:37024400-37028400	Enhancers	Primary T cells fromperipheralblood	blood
3	chr2:37024400-37033800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr2:37025200-37033000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:37027400-37044200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:37027600-37028200	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr2:37027600-37036200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr2:37027800-37028000	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr2:37027800-37028200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr2:37027800-37028200	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr2:37027800-37028400	Enhancers	GM12878-XiMat	blood
12	chr2:37028200-37030800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr2:37028400-37029400	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr2:37029200-37030200	Enhancers	Stomach Mucosa	stomach
15	chr2:37029400-37030000	Enhancers	HepG2	liver
16	chr2:37029400-37034200	Enhancers	Primary T cells fromperipheralblood	blood
17	chr2:37030200-37032800	Weak transcription	Stomach Mucosa	stomach
18	chr2:37030800-37031600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr2:37031400-37031600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr2:37031600-37032200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr2:37031600-37032800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr2:37031600-37035400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr2:37032400-37033000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr2:37032400-37033800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr2:37032800-37033400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr2:37032800-37033400	Enhancers	Stomach Mucosa	stomach
27	chr2:37033000-37033400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr2:37033000-37034200	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr2:37033000-37034400	Active TSS	Rectal Mucosa Donor 29	rectum
30	chr2:37033000-37034600	Strong transcription	Ovary	ovary
31	chr2:37033200-37033400	Flanking Active TSS	K562	blood
32	chr2:37033400-37033600	Flanking Active TSS	Stomach Mucosa	stomach
33	chr2:37033600-37033800	Enhancers	Stomach Mucosa	stomach
34	chr2:37033800-37034200	Active TSS	Stomach Mucosa	stomach
35	chr2:37033800-37034400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr2:37033800-37035400	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr2:37034000-37034800	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr2:37034200-37034400	Flanking Active TSS	Stomach Mucosa	stomach
39	chr2:37034200-37034600	Active TSS	Colonic Mucosa	Colon
40	chr2:37034200-37034600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
41	chr2:37034200-37034600	Active TSS	Rectal Smooth Muscle	rectum
42	chr2:37034200-37035200	Enhancers	Duodenum Mucosa	Duodenum
43	chr2:37034200-37035600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr2:37034400-37034600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr2:37034400-37034800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
46	chr2:37034400-37035800	Enhancers	Stomach Mucosa	stomach
47	chr2:37034600-37035200	Weak transcription	Colonic Mucosa	Colon
48	chr2:37034600-37036200	Enhancers	Rectal Mucosa Donor 31	rectum
49	chr2:37034600-37042800	Weak transcription	Ovary	ovary
50	chr2:37034800-37035400	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links