Variant report

Variant	rs2072527
Chromosome Location	chr2:37028486-37028487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37026211..37031295-chr2:37031745..37037130,6	MCF-7	breast:
2	chr2:37026042..37027658-chr2:37028263..37030381,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10180537	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs10200548	0.86[CHB][hapmap]
rs10208622	1.00[MEX][hapmap]
rs10209211	0.85[ASN][1000 genomes]
rs11124543	0.83[ASN][1000 genomes]
rs11124546	0.92[CHB][hapmap];0.92[ASN][1000 genomes]
rs11892193	0.86[CHB][hapmap]
rs11901202	0.90[GIH][hapmap];1.00[MEX][hapmap]
rs11902881	1.00[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.94[ASN][1000 genomes]
rs12618670	0.94[ASN][1000 genomes]
rs12622304	0.91[ASN][1000 genomes]
rs13417089	0.86[CHB][hapmap]
rs13419776	1.00[MEX][hapmap]
rs1558701	0.92[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs17019851	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.92[ASN][1000 genomes]
rs17019854	1.00[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs2041809	0.92[CHB][hapmap];0.90[CHD][hapmap];0.89[JPT][hapmap]
rs2058683	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs2072525	0.96[GIH][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs2072526	0.90[GIH][hapmap]
rs2276668	0.84[ASN][1000 genomes]
rs2540934	1.00[MEX][hapmap]
rs3821147	0.89[JPT][hapmap]
rs4670169	0.93[CHD][hapmap];1.00[JPT][hapmap]
rs4670615	0.88[ASN][1000 genomes]
rs4670616	0.92[ASN][1000 genomes]
rs56740767	0.80[ASN][1000 genomes]
rs57032858	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6544039	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6544040	0.92[ASN][1000 genomes]
rs6544041	0.92[ASN][1000 genomes]
rs6544042	0.89[ASN][1000 genomes]
rs72867896	1.00[ASN][1000 genomes]
rs7592382	0.83[CHB][hapmap]
rs7606098	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs763724	0.92[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs879613	0.89[JPT][hapmap]
rs879614	0.89[JPT][hapmap]
rs929640	1.00[CHB][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv428395	chr2:36990348-37300352	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv2682	chr2:37015550-37060432	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1011014	chr2:37027819-37095895	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37013000-37033000	Weak transcription	Ovary	ovary
2	chr2:37024400-37033800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr2:37025200-37033000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:37027400-37044200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:37027600-37036200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr2:37028200-37030800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr2:37028400-37029400	Weak transcription	Primary T cells fromperipheralblood	blood

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