Variant report

Variant	rs11124546
Chromosome Location	chr2:37034117-37034118
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37029593..37034563-chr2:37035958..37037760,4	K562	blood:
2	chr2:37026211..37031295-chr2:37031745..37037130,6	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10174403	1.00[CEU][hapmap]
rs10180537	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10209211	0.82[ASN][1000 genomes]
rs11124547	0.86[JPT][hapmap]
rs11892193	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs11901202	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11902881	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12616788	1.00[CEU][hapmap]
rs12618670	0.88[ASN][1000 genomes]
rs12622304	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13418106	1.00[CEU][hapmap]
rs13418202	1.00[CEU][hapmap]
rs1558701	0.85[CHB][hapmap];0.91[ASN][1000 genomes]
rs17019813	1.00[CEU][hapmap]
rs17019851	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17019854	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1861390	1.00[CEU][hapmap]
rs2041809	0.85[CHB][hapmap]
rs2072526	1.00[CEU][hapmap]
rs2072527	0.92[CHB][hapmap];0.92[ASN][1000 genomes]
rs2276668	0.82[ASN][1000 genomes]
rs2276670	1.00[CEU][hapmap]
rs4670615	0.85[ASN][1000 genomes]
rs4670616	0.97[ASN][1000 genomes]
rs57032858	0.88[ASN][1000 genomes]
rs57817021	0.82[ASN][1000 genomes]
rs6544039	0.85[CHB][hapmap]
rs6544040	0.87[ASN][1000 genomes]
rs6544041	0.87[ASN][1000 genomes]
rs6544042	0.84[ASN][1000 genomes]
rs72867896	0.92[ASN][1000 genomes]
rs7592382	1.00[JPT][hapmap]
rs7606098	0.92[CHB][hapmap];0.91[ASN][1000 genomes]
rs763724	0.85[CHB][hapmap];0.91[ASN][1000 genomes]
rs929640	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv428395	chr2:36990348-37300352	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv2682	chr2:37015550-37060432	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1011014	chr2:37027819-37095895	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv999465	chr2:37029347-37095895	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37027400-37044200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:37027600-37036200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
3	chr2:37029400-37034200	Enhancers	Primary T cells fromperipheralblood	blood
4	chr2:37031600-37035400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr2:37033000-37034200	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr2:37033000-37034400	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr2:37033000-37034600	Strong transcription	Ovary	ovary
8	chr2:37033800-37034200	Active TSS	Stomach Mucosa	stomach
9	chr2:37033800-37034400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr2:37033800-37035400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr2:37034000-37034800	Enhancers	Sigmoid Colon	Sigmoid Colon

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