Variant report

Variant	rs6544039
Chromosome Location	chr2:37015703-37015704
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37014502..37017375-chr2:37021178..37022910,2	K562	blood:
2	chr2:37005141..37008070-chr2:37014842..37017137,3	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1014584	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10179017	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10180537	0.86[CHB][hapmap];0.80[AMR][1000 genomes]
rs10209055	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10209211	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11124543	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11124545	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11124546	0.85[CHB][hapmap]
rs11692052	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11902881	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs12618630	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12618670	0.85[ASN][1000 genomes]
rs1558701	0.86[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17019851	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs17019854	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs2041809	1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes]
rs2058683	0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2072527	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2276668	0.81[ASN][1000 genomes]
rs2372713	0.86[CEU][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3821147	0.89[JPT][hapmap]
rs4670169	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs4670615	0.87[ASN][1000 genomes]
rs4670616	0.83[EUR][1000 genomes]
rs6544040	0.84[ASN][1000 genomes]
rs6544041	0.84[ASN][1000 genomes]
rs6544042	0.81[ASN][1000 genomes]
rs6721362	0.85[CEU][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72867896	0.82[ASN][1000 genomes]
rs7606098	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs763724	0.88[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs879613	0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs879614	0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs929640	0.92[CHB][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv428395	chr2:36990348-37300352	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	esv1821275	chr2:36991736-37018278	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv2682	chr2:37015550-37060432	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37009800-37016200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr2:37010000-37016000	Weak transcription	Brain Anterior Caudate	brain
3	chr2:37010000-37021600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr2:37012400-37016400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:37012800-37016200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr2:37012800-37016200	Weak transcription	Fetal Thymus	thymus
7	chr2:37012800-37024800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr2:37013000-37016200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr2:37013000-37016200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr2:37013000-37033000	Weak transcription	Ovary	ovary
11	chr2:37013200-37024400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr2:37013400-37016200	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr2:37014400-37016800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr2:37015600-37015800	Enhancers	Fetal Heart	heart

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