Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1014584	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10179017	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10180537	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10209055	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10209211	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11124545	0.87[AMR][1000 genomes]
rs11692052	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12618630	0.87[AMR][1000 genomes]
rs12618670	0.86[ASN][1000 genomes]
rs1558701	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17019851	0.80[ASN][1000 genomes]
rs2041809	0.85[ASN][1000 genomes]
rs2072527	0.83[ASN][1000 genomes]
rs2276668	0.82[ASN][1000 genomes]
rs2372713	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4670610	0.80[EUR][1000 genomes]
rs4670615	0.90[ASN][1000 genomes]
rs4670616	0.80[ASN][1000 genomes]
rs4670618	0.81[EUR][1000 genomes]
rs6544039	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6544040	0.85[ASN][1000 genomes]
rs6544041	0.85[ASN][1000 genomes]
rs6544042	0.82[ASN][1000 genomes]
rs6721362	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72867896	0.83[ASN][1000 genomes]
rs7606098	0.84[ASN][1000 genomes]
rs763724	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv428395	chr2:36990348-37300352	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv2682	chr2:37015550-37060432	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37010000-37021600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr2:37012800-37024800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr2:37013000-37033000	Weak transcription	Ovary	ovary
4	chr2:37013200-37024400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr2:37016200-37019600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr2:37016800-37020200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr2:37016800-37024600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr2:37018400-37019200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr2:37018400-37021200	Enhancers	Thymus	Thymus
10	chr2:37018400-37021400	Enhancers	Fetal Thymus	thymus
11	chr2:37018600-37019800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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