Variant report

Variant	rs10180537
Chromosome Location	chr2:37034503-37034504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37029593..37034563-chr2:37035958..37037760,4	K562	blood:
2	chr2:37026211..37031295-chr2:37031745..37037130,6	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1014584	0.80[AMR][1000 genomes]
rs10179017	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10198181	0.81[EUR][1000 genomes]
rs10200515	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10200548	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10209055	0.80[AMR][1000 genomes]
rs10209211	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11124543	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11124546	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11692052	0.81[EUR][1000 genomes]
rs11892193	0.83[ASN][1000 genomes]
rs11902881	1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs12618630	0.80[AMR][1000 genomes]
rs12618670	0.89[ASN][1000 genomes]
rs12622304	0.96[ASN][1000 genomes]
rs1558701	0.88[CHB][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17019851	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs17019854	1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs2041809	0.86[CHB][hapmap]
rs2072527	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs2372713	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34040386	0.82[AMR][1000 genomes]
rs4670171	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4670615	0.85[ASN][1000 genomes]
rs4670616	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4670618	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57032858	0.88[ASN][1000 genomes]
rs6544039	0.86[CHB][hapmap];0.80[AMR][1000 genomes]
rs6544040	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6544041	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6544042	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6721362	0.80[AMR][1000 genomes]
rs72867896	0.92[ASN][1000 genomes]
rs7592382	1.00[JPT][hapmap]
rs7606098	1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs763724	0.88[CHB][hapmap];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs929640	1.00[CHB][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv428395	chr2:36990348-37300352	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv2682	chr2:37015550-37060432	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1011014	chr2:37027819-37095895	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv999465	chr2:37029347-37095895	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37027400-37044200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:37027600-37036200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
3	chr2:37031600-37035400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr2:37033000-37034600	Strong transcription	Ovary	ovary
5	chr2:37033800-37035400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr2:37034000-37034800	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr2:37034200-37034600	Active TSS	Colonic Mucosa	Colon
8	chr2:37034200-37034600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
9	chr2:37034200-37034600	Active TSS	Rectal Smooth Muscle	rectum
10	chr2:37034200-37035200	Enhancers	Duodenum Mucosa	Duodenum
11	chr2:37034200-37035600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr2:37034400-37034600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:37034400-37034800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
14	chr2:37034400-37035800	Enhancers	Stomach Mucosa	stomach

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