Variant report

Variant	rs10198181
Chromosome Location	chr2:37027395-37027396
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10179017	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10180537	0.81[EUR][1000 genomes]
rs11692052	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12618630	0.84[AMR][1000 genomes]
rs1558701	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2372713	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34040386	0.82[AMR][1000 genomes]
rs4670171	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4670618	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6721362	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7606098	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv428395	chr2:36990348-37300352	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv2682	chr2:37015550-37060432	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37013000-37033000	Weak transcription	Ovary	ovary
2	chr2:37022200-37027600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr2:37024400-37028400	Enhancers	Primary T cells fromperipheralblood	blood
4	chr2:37024400-37033800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr2:37025200-37033000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:37026600-37027800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr2:37026800-37027600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr2:37026800-37027800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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