Variant report

Variant	nsv1012485
Chromosome Location	chr3:145861750-145947125
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2149)
CpG islands
(count:1042)
Chromatin interactive
region (count:77)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:10)

(count:2149 , 50 per page) page: 1 2 3 4 5 6 7 ... 43

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr3:145941119-145941527	HepG2	liver:	n/a	n/a
2	ARID3A	chr3:145905102-145905388	K562	blood:	n/a	n/a
3	ARID3A	chr3:145866291-145866894	HepG2	liver:	n/a	n/a
4	ARID3A	chr3:145905111-145905471	HepG2	liver:	n/a	n/a
5	ARID3A	chr3:145939594-145940831	HepG2	liver:	n/a	n/a
6	ARID3A	chr3:145881409-145881740	HepG2	liver:	n/a	n/a
7	ARID3A	chr3:145907384-145907759	HepG2	liver:	n/a	n/a
8	ARID3A	chr3:145871872-145872857	HepG2	liver:	n/a	chr3:145872347-145872363
9	ARID3A	chr3:145936731-145937064	HepG2	liver:	n/a	n/a
10	ARID3A	chr3:145878060-145878370	HepG2	liver:	n/a	n/a
11	ARID3A	chr3:145878807-145879683	HepG2	liver:	n/a	n/a
12	ATF3	chr3:145881251-145881898	A549	lung:	n/a	n/a
13	ATF3	chr3:145883039-145883561	A549	lung:	n/a	n/a
14	ATF3	chr3:145884074-145884786	A549	lung:	n/a	n/a
15	ATF3	chr3:145878768-145879437	A549	lung:	n/a	chr3:145879029-145879038 chr3:145879022-145879031
16	ATF3	chr3:145884110-145884736	A549	lung:	n/a	n/a
17	ATF3	chr3:145881178-145881929	A549	lung:	n/a	n/a
18	BACH1	chr3:145877746-145879300	H1-hESC	embryonic stem cell:	n/a	n/a
19	BATF	chr3:145936724-145936984	GM12878	blood:	n/a	chr3:145936966-145936975
20	BCL3	chr3:145882798-145883742	A549	lung:	n/a	n/a
21	BCL3	chr3:145881242-145882194	A549	lung:	n/a	n/a
22	BCL3	chr3:145939979-145940826	A549	lung:	n/a	n/a
23	BCL3	chr3:145883950-145884783	A549	lung:	n/a	n/a
24	BCL3	chr3:145879045-145879892	A549	lung:	n/a	chr3:145879065-145879078 chr3:145879062-145879075 chr3:145879564-145879573 chr3:145879061-145879074 chr3:145879061-145879070
25	BCL3	chr3:145881165-145882063	A549	lung:	n/a	n/a
26	BCL3	chr3:145877875-145879857	A549	lung:	n/a	chr3:145878879-145878892 chr3:145878816-145878829 chr3:145878912-145878925 chr3:145879065-145879078 chr3:145879062-145879075 chr3:145878817-145878830 chr3:145879564-145879573 chr3:145879061-145879074 chr3:145879061-145879070 chr3:145878616-145878629
27	BCL3	chr3:145884072-145884734	A549	lung:	n/a	n/a
28	BHLHE40	chr3:145878763-145879434	HepG2	liver:	n/a	chr3:145879070-145879086 chr3:145879064-145879080 chr3:145878903-145878919 chr3:145878975-145878991 chr3:145878968-145878984
29	BHLHE40	chr3:145940155-145940799	HepG2	liver:	n/a	n/a
30	BRCA1	chr3:145907921-145907927	Hela-S3	cervix:	n/a	n/a
31	BRCA1	chr3:145924542-145924588	Hela-S3	cervix:	n/a	n/a
32	BRCA1	chr3:145877526-145879027	Hela-S3	cervix:	n/a	chr3:145878834-145878843
33	BRCA1	chr3:145881384-145882143	Hela-S3	cervix:	n/a	n/a
34	BRCA1	chr3:145878644-145879148	H1-hESC	embryonic stem cell:	n/a	chr3:145878834-145878843
35	BRCA1	chr3:145907095-145907688	Hela-S3	cervix:	n/a	n/a
36	BRCA1	chr3:145884019-145884965	Hela-S3	cervix:	n/a	n/a
37	BRCA1	chr3:145878647-145879379	HepG2	liver:	n/a	chr3:145878834-145878843
38	CCNT2	chr3:145878882-145879094	K562	blood:	n/a	n/a
39	CEBPB	chr3:145936409-145936418	K562	blood:	n/a	n/a
40	CEBPB	chr3:145882861-145885527	Hela-S3	cervix:	n/a	chr3:145884293-145884304 chr3:145885330-145885341 chr3:145885330-145885341 chr3:145885328-145885341
41	CEBPB	chr3:145866348-145866756	MCF-7	breast:	n/a	n/a
42	CEBPB	chr3:145907044-145907156	K562	blood:	n/a	chr3:145907081-145907092
43	CEBPB	chr3:145881178-145882375	A549	lung:	n/a	chr3:145881574-145881585 chr3:145881594-145881605
44	CEBPB	chr3:145906904-145907712	Hela-S3	cervix:	n/a	chr3:145907081-145907092
45	CEBPB	chr3:145943941-145944226	HepG2	liver:	n/a	chr3:145944070-145944081
46	CEBPB	chr3:145907021-145907648	H1-hESC	embryonic stem cell:	n/a	chr3:145907081-145907092
47	CEBPB	chr3:145877869-145879171	Hela-S3	cervix:	n/a	n/a
48	CEBPB	chr3:145943966-145944149	Hela-S3	cervix:	n/a	chr3:145944070-145944081
49	CEBPB	chr3:145872776-145873081	K562	blood:	n/a	chr3:145872911-145872923
50	CEBPB	chr3:145866542-145866697	HepG2	liver:	n/a	n/a

(count:1042 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:145879686-145879736	ovcar-3	ovarian:	n/a
2	chr3:145879626-145879676	RPTEC	kidney:	n/a
3	chr3:145878979-145879029	GM12878	blood:	n/a
4	chr3:145879686-145879736	AoSMC	blood vessel:	n/a
5	chr3:145878963-145879013	HAEpiC	amniotic membrane:	n/a
6	chr3:145879686-145879736	ovcar-3	ovarian:	n/a
7	chr3:145879626-145879676	RPTEC	kidney:	n/a
8	chr3:145878979-145879029	GM12878	blood:	n/a
9	chr3:145879686-145879736	AoSMC	blood vessel:	n/a
10	chr3:145878963-145879013	HAEpiC	amniotic membrane:	n/a
11	chr3:145881800-145881850	HEEpiC	esophagus:	n/a
12	chr3:145879430-145879480	BE2_C	brain:	n/a
13	chr3:145878177-145878227	MCF-7	breast:	n/a
14	chr3:145878539-145878589	GM12891	blood:	n/a
15	chr3:145878979-145879029	NHDF-neo	bronchial:	n/a
16	chr3:145879642-145879692	SK-N-SH	brain:	n/a
17	chr3:145878431-145878481	NT2-D1	testis:	n/a
18	chr3:145878963-145879013	HL-60	blood:	n/a
19	chr3:145879642-145879692	GM06990	blood:	n/a
20	chr3:145879084-145879134	ProgFib	skin:	n/a
21	chr3:145879568-145879618	HEEpiC	esophagus:	n/a
22	chr3:145879710-145879760	Jurkat	blood:	n/a
23	chr3:145878963-145879013	NHBE	bronchial:	n/a
24	chr3:145879084-145879134	GM19239	blood:	n/a
25	chr3:145878177-145878227	T-47D	breast:	n/a
26	chr3:145879642-145879692	Caco-2	colon:	n/a
27	chr3:145883489-145883539	HNPCEpiC	eye:	n/a
28	chr3:145878979-145879029	NHBE	bronchial:	n/a
29	chr3:145878539-145878589	HEEpiC	esophagus:	n/a
30	chr3:145883489-145883539	HMEC	breast:	n/a
31	chr3:145878979-145879029	U87	brain:	n/a
32	chr3:145878979-145879029	HCT-116	colon:	n/a
33	chr3:145879277-145879327	NHDF-neo	bronchial:	n/a
34	chr3:145879710-145879760	ProgFib	skin:	n/a
35	chr3:145881800-145881850	HIPEpiC	eye:	n/a
36	chr3:145879430-145879480	AG10803	skin:	n/a
37	chr3:145878539-145878589	HRPEpiC	eye:	n/a
38	chr3:145871392-145871442	GM19239	blood:	n/a
39	chr3:145879277-145879327	GM12891	blood:	n/a
40	chr3:145879277-145879327	HEEpiC	esophagus:	n/a
41	chr3:145879686-145879736	SK-N-SH_RA	brain:	n/a
42	chr3:145879686-145879736	HepG2	liver:	n/a
43	chr3:145875907-145875957	SK-N-SH	brain:	n/a
44	chr3:145879686-145879736	IMR90	lung:	fetal
45	chr3:145878431-145878481	Caco-2	colon:	n/a
46	chr3:145879568-145879618	HAEpiC	amniotic membrane:	n/a
47	chr3:145871392-145871442	U87	brain:	n/a
48	chr3:145883489-145883539	HUVEC	blood vessel:	n/a
49	chr3:145879642-145879692	MCF10A-Er-Src	breast:	n/a
50	chr3:145879710-145879760	MCF-7	breast:	n/a

(count:77 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr3:145865509..145867074-chr3:145870719..145872599,2	K562	blood:
2	chr3:145881041..145885690-chr3:145886054..145890900,6	MCF-7	breast:
3	chr3:145870477..145872332-chr3:145872492..145874567,2	MCF-7	breast:
4	chr3:145938654..145939295-chr3:146044870..146045659,2	MCF-7	breast:
5	chr3:145832179..145836696-chr3:145881447..145885871,6	MCF-7	breast:
6	chr3:145783076..145784215-chr3:145904959..145906020,4	MCF-7	breast:
7	chr3:145878599..145881384-chr3:145968449..145970595,2	MCF-7	breast:
8	chr11:58245426..58248139-chr3:145902493..145905033,2	MCF-7	breast:
9	chr3:145877161..145880633-chr3:145902263..145906629,5	MCF-7	breast:
10	chr3:145884303..145885954-chr3:145902265..145904653,2	MCF-7	breast:
11	chr3:145877632..145880246-chrX:55477813..55479806,2	MCF-7	breast:
12	chr11:67889304..67890106-chr3:145878724..145879660,2	Hela-S3	cervix:
13	chr3:145876765..145880789-chr3:145885972..145889074,4	MCF-7	breast:
14	chr3:145880474..145882151-chr3:145882740..145884446,2	K562	blood:
15	chr3:145779679..145784840-chr3:145877412..145880527,5	MCF-7	breast:
16	chr3:145782122..145785411-chr3:145878106..145882365,5	MCF-7	breast:
17	chr3:145936710..145937294-chr3:146312292..146312926,2	K562	blood:
18	chr3:145860639..145862586-chr3:145877075..145878969,2	MCF-7	breast:
19	chr3:145843855..145845524-chr3:145864168..145866252,2	MCF-7	breast:
20	chr3:53195198..53195701-chr3:145873151..145873651,2	Hela-S3	cervix:
21	chr3:145897285..145900091-chr3:145902174..145904427,2	MCF-7	breast:
22	chr3:145856481..145858828-chr3:145868804..145871513,3	MCF-7	breast:
23	chr3:145936384..145937370-chr3:146044670..146045567,4	MCF-7	breast:
24	chr3:145781835..145785011-chr3:145902581..145906704,4	MCF-7	breast:
25	chr3:145936366..145937318-chr3:146295230..146296148,3	K562	blood:
26	chr3:145738494..145739375-chr3:145904889..145905776,3	MCF-7	breast:
27	chr3:145889043..145893047-chr3:145893361..145897417,4	K562	blood:
28	chr3:145868830..145872262-chr3:145881585..145883218,3	MCF-7	breast:
29	chr3:145897285..145900091-chr3:145902174..145904427,2	MCF-7	breast:
30	chr3:145938152..145938842-chr3:146358330..146358865,2	MCF-7	breast:
31	chr3:145877078..145879512-chr3:145896928..145899546,3	MCF-7	breast:
32	chr3:145878063..145880102-chr6:43735669..43738313,2	MCF-7	breast:
33	chr3:145937350..145938198-chr3:146044684..146045576,2	K562	blood:
34	chr3:145938109..145938869-chr3:146044708..146045495,2	MCF-7	breast:
35	chr20:56286022..56288671-chr3:145875051..145877020,2	MCF-7	breast:
36	chr3:145783014..145783624-chr3:145865958..145866776,2	MCF-7	breast:
37	chr3:145783388..145783946-chr3:145902245..145902938,2	MCF-7	breast:
38	chr3:145884303..145885954-chr3:145902265..145904653,2	MCF-7	breast:
39	chr3:145863564..145865449-chr3:145867210..145869807,2	MCF-7	breast:
40	chr3:145936744..145937271-chr3:146358471..146359250,3	K562	blood:
41	chr3:145885862..145887990-chr3:145898381..145900841,2	MCF-7	breast:
42	chr3:145743585..145744532-chr3:145904873..145905604,2	MCF-7	breast:
43	chr3:145940299..145941372-chr3:146044662..146045624,8	MCF-7	breast:
44	chr3:145870477..145872332-chr3:145872492..145874567,2	MCF-7	breast:
45	chr3:145936462..145937370-chr3:146044619..146045821,9	MCF-7	breast:
46	chr3:145874654..145883964-chr3:145902489..145908084,13	MCF-7	breast:
47	chr3:145787365..145792721-chr3:145875341..145880381,7	MCF-7	breast:
48	chr3:145872676..145874418-chr3:145880885..145882915,2	MCF-7	breast:
49	chr3:145779537..145781361-chr3:145905477..145907451,2	MCF-7	breast:
50	chr3:145868830..145872262-chr3:145881585..145883218,3	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC107021.1-6	chr3:145880657-145880745	NONHSAT092552
2	lnc-PLOD2-3	chr3:145884655-145884915	NONHSAT092553
3	lnc-AC107021.1-6	chr3:145881383-145881588	NONHSAT092552

No data

(count:10 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location
1	PLSCR4	hsa-miR-15b-5p	chr3:145910629-145910622
2	PLSCR4	hsa-miR-16-5p	chr3:145910585-145910607
3	PLSCR4	hsa-miR-15b-5p	chr3:145910793-145910815
4	PLSCR4	hsa-miR-16-5p	chr3:145910796-145910817
5	PLSCR4	hsa-miR-16-5p	chr3:145910623-145910644
6	PLSCR4	hsa-miR-124-3p	chr3:145910564-145910583
7	PLSCR4	hsa-miR-15b-5p	chr3:145910585-145910606
8	PLSCR4	hsa-miR-16-5p	chr3:145910629-145910622
9	PLSCR4	hsa-miR-15b-5p	chr3:145910623-145910644
10	PLSCR4	hsa-miR-103a-3p	chr3:145910624-145910647

Variant related genes	Relation type
PLSCR4	TF binding region
PLOD2	TF binding region
PLSCR4	CpG island
PLOD2	CpG island
ENSG00000124225	chromatin interactions
ENSG00000243415	chromatin interactions
ENSG00000187601	chromatin interactions
ENSG00000232013	chromatin interactions
ENSG00000255236	chromatin interactions
ENSG00000266328	chromatin interactions
ENSG00000163635	chromatin interactions
ENSG00000112715	chromatin interactions
ENSG00000182481	chromatin interactions
ENSG00000163932	chromatin interactions
ENSG00000152952	chromatin interactions
ENSG00000114698	chromatin interactions

Extended variants
information (count: 3238 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:3238 , 50 per page) page: 1 2 3 4 5 6 7 ... 65

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs527573040	chr3:145861776-145861777	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs552549003	chr3:145861795-145861796	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs1707468	chr3:145861812-145861813	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
4	rs190604999	chr3:145861820-145861821	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs146927683	chr3:145861845-145861846	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs372105136	chr3:145861865-145861866	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs182898323	chr3:145861905-145861906	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs187768340	chr3:145861973-145861974	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs58957322	chr3:145861989-145861990	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs571749712	chr3:145862015-145862016	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs537822558	chr3:145862048-145862049	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs147989249	chr3:145862056-145862057	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs558850213	chr3:145862137-145862138	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs569160762	chr3:145862156-145862157	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs140869131	chr3:145862169-145862170	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs35687630	chr3:145862214-145862215	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs202071625	chr3:145862273-145862274	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs63302160	chr3:145862277-145862278	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs201122252	chr3:145862280-145862281	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs563122255	chr3:145862358-145862359	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs374399121	chr3:145862360-145862361	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs574793954	chr3:145862365-145862366	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs191110669	chr3:145862369-145862370	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs375125658	chr3:145862411-145862412	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs560489057	chr3:145862456-145862457	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs573367022	chr3:145862524-145862525	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs373221508	chr3:145862635-145862636	Weak transcription Enhancers Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs376410544	chr3:145862637-145862638	Weak transcription Enhancers Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs371208933	chr3:145862639-145862640	Weak transcription Enhancers Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs376729950	chr3:145862640-145862641	Weak transcription Enhancers Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs9809909	chr3:145862641-145862642	Weak transcription Enhancers Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs182946885	chr3:145862688-145862689	Weak transcription Enhancers Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs552484039	chr3:145862692-145862693	Weak transcription Enhancers Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs368326090	chr3:145862695-145862696	Weak transcription Enhancers Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs368238895	chr3:145862718-145862719	Weak transcription Enhancers Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs187624826	chr3:145862748-145862749	Weak transcription Enhancers Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs191739295	chr3:145862763-145862764	Weak transcription Enhancers Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs535192124	chr3:145862770-145862771	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs547137073	chr3:145862824-145862825	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs565315197	chr3:145862865-145862866	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs184958144	chr3:145862866-145862867	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs372890801	chr3:145862983-145862984	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs557348932	chr3:145863002-145863003	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs577442480	chr3:145863014-145863015	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs534154892	chr3:145863034-145863035	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs538535698	chr3:145863080-145863081	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs556469643	chr3:145863091-145863092	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs116541932	chr3:145863107-145863108	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs542317868	chr3:145863130-145863131	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs577283167	chr3:145863274-145863275	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Basal cell lymphoma	21115979	CNVD
Colorectal cancer	18645599	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Hepatocellular carcinoma	16750200	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myelodysplastic syndrome	21251322	CNVD
Blepharophimosis-ptosis-epicanthus inversus syndrome	22067867	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
abnormal development	18461090	CNVD
Breast cancer	21364760	CNVD
Mental retardation	17847001	CNVD
Basal cell lymphoma	17170743	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Autism	18923514	CNVD
Autism	22241247	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Autism	21956041	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Breast cancer	16608533	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	21509527	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:1872 , 50 per page) page: 1 2 3 4 5 6 7 ... 38

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145832000-145870800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:145835800-145874000	Weak transcription	Psoas Muscle	Psoas
3	chr3:145840400-145874000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr3:145850400-145864400	Weak transcription	HMEC	breast
5	chr3:145851600-145864200	Weak transcription	Right Atrium	heart
6	chr3:145855800-145862000	Enhancers	Fetal Stomach	stomach
7	chr3:145856200-145862200	Enhancers	Fetal Heart	heart
8	chr3:145856400-145864200	Weak transcription	Left Ventricle	heart
9	chr3:145856400-145875800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:145858000-145861800	Enhancers	A549	lung
11	chr3:145858800-145866400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr3:145859200-145862000	Enhancers	NHLF	lung
13	chr3:145860000-145863000	Genic enhancers	Osteobl	bone
14	chr3:145860200-145861800	Enhancers	Fetal Intestine Small	intestine
15	chr3:145860200-145861800	Enhancers	HSMM	muscle
16	chr3:145860200-145861800	Enhancers	HSMMtube	muscle
17	chr3:145860200-145862000	Enhancers	Muscle Satellite Cultured Cells	--
18	chr3:145860200-145862000	Enhancers	Fetal Lung	lung
19	chr3:145860200-145862000	Enhancers	HUVEC	blood vessel
20	chr3:145860400-145861800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:145860400-145861800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr3:145860400-145861800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr3:145860400-145861800	Enhancers	Adipose Nuclei	Adipose
24	chr3:145860400-145861800	Enhancers	Brain Substantia Nigra	brain
25	chr3:145860400-145861800	Enhancers	Fetal Kidney	kidney
26	chr3:145860400-145862200	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr3:145860400-145875600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr3:145860600-145861800	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr3:145860600-145862000	Enhancers	Liver	Liver
30	chr3:145860600-145868800	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr3:145860800-145861800	Active TSS	Stomach Smooth Muscle	stomach
32	chr3:145860800-145864200	Weak transcription	Gastric	stomach
33	chr3:145860800-145866000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr3:145860800-145866200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr3:145860800-145870000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr3:145860800-145873800	Weak transcription	Brain Cingulate Gyrus	brain
37	chr3:145860800-145874000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr3:145860800-145874000	Weak transcription	Fetal Muscle Leg	muscle
39	chr3:145861000-145861800	Enhancers	Ovary	ovary
40	chr3:145861000-145869000	Weak transcription	Fetal Intestine Large	intestine
41	chr3:145861000-145870200	Weak transcription	Brain Anterior Caudate	brain
42	chr3:145861000-145876400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr3:145861200-145861800	Enhancers	Right Ventricle	heart
44	chr3:145861400-145861800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr3:145861400-145861800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr3:145861400-145861800	Enhancers	Aorta	Aorta
47	chr3:145861400-145861800	Flanking Active TSS	Rectal Smooth Muscle	rectum
48	chr3:145861400-145865600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr3:145861400-145866000	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr3:145861400-145866200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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