Variant report

Variant	rs558850213
Chromosome Location	chr3:145862137-145862138
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:145860639..145862586-chr3:145877075..145878969,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152952	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525829	chr3:145614317-145863779	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv4046	chr3:145693249-145880189	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv877613	chr3:145833232-145912055	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1011146	chr3:145859022-145911429	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv1012485	chr3:145861750-145947125	Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv536758	chr3:145861750-145947125	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145832000-145870800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:145835800-145874000	Weak transcription	Psoas Muscle	Psoas
3	chr3:145840400-145874000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr3:145850400-145864400	Weak transcription	HMEC	breast
5	chr3:145851600-145864200	Weak transcription	Right Atrium	heart
6	chr3:145856200-145862200	Enhancers	Fetal Heart	heart
7	chr3:145856400-145864200	Weak transcription	Left Ventricle	heart
8	chr3:145856400-145875800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr3:145858800-145866400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr3:145860000-145863000	Genic enhancers	Osteobl	bone
11	chr3:145860400-145862200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr3:145860400-145875600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:145860600-145868800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr3:145860800-145864200	Weak transcription	Gastric	stomach
15	chr3:145860800-145866000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr3:145860800-145866200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr3:145860800-145870000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr3:145860800-145873800	Weak transcription	Brain Cingulate Gyrus	brain
19	chr3:145860800-145874000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:145860800-145874000	Weak transcription	Fetal Muscle Leg	muscle
21	chr3:145861000-145869000	Weak transcription	Fetal Intestine Large	intestine
22	chr3:145861000-145870200	Weak transcription	Brain Anterior Caudate	brain
23	chr3:145861000-145876400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr3:145861400-145865600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr3:145861400-145866000	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr3:145861400-145866200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr3:145861400-145866400	Weak transcription	NHDF-Ad	bronchial
28	chr3:145861400-145870200	Weak transcription	Small Intestine	intestine
29	chr3:145861400-145870600	Weak transcription	NH-A	brain
30	chr3:145861600-145862800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr3:145861600-145863600	Enhancers	Colon Smooth Muscle	Colon
32	chr3:145861600-145864200	Weak transcription	HepG2	liver
33	chr3:145861600-145869000	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr3:145861600-145870000	Weak transcription	Brain Hippocampus Middle	brain
35	chr3:145861800-145862600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr3:145861800-145862800	Weak transcription	A549	lung
37	chr3:145861800-145863600	Enhancers	Rectal Smooth Muscle	rectum
38	chr3:145861800-145864200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr3:145861800-145864200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr3:145861800-145864200	Weak transcription	Ovary	ovary
41	chr3:145861800-145864200	Weak transcription	Right Ventricle	heart
42	chr3:145861800-145864600	Enhancers	Stomach Smooth Muscle	stomach
43	chr3:145861800-145865200	Weak transcription	Fetal Intestine Small	intestine
44	chr3:145861800-145866600	Weak transcription	Aorta	Aorta
45	chr3:145861800-145866800	Weak transcription	Fetal Kidney	kidney
46	chr3:145861800-145867600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr3:145861800-145870200	Weak transcription	Brain Substantia Nigra	brain
48	chr3:145861800-145870400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr3:145861800-145870800	Weak transcription	Pancreas	Pancrea
50	chr3:145861800-145872200	Weak transcription	Adipose Nuclei	Adipose

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