Variant report

Variant	nsv1019265
Chromosome Location	chr6:106587627-106727591
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1967)
CpG islands
(count:919)
Chromatin interactive
region (count:87)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1967 , 50 per page) page: 1 2 3 4 5 6 7 ... 40

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:106636324-106636583	HepG2	liver:	n/a	n/a
2	ARID3A	chr6:106673530-106673875	HepG2	liver:	n/a	n/a
3	ARID3A	chr6:106705069-106705352	K562	blood:	n/a	n/a
4	ARID3A	chr6:106588539-106588816	K562	blood:	n/a	n/a
5	ARID3A	chr6:106709625-106709909	HepG2	liver:	n/a	n/a
6	ATF1	chr6:106603056-106603580	K562	blood:	n/a	n/a
7	ATF1	chr6:106597339-106597634	K562	blood:	n/a	n/a
8	ATF2	chr6:106634504-106634960	GM12878	blood:	n/a	n/a
9	ATF2	chr6:106668286-106668769	GM12878	blood:	n/a	n/a
10	ATF2	chr6:106615135-106615849	GM12878	blood:	n/a	n/a
11	ATF2	chr6:106615027-106615847	GM12878	blood:	n/a	n/a
12	ATF2	chr6:106629867-106630945	GM12878	blood:	n/a	n/a
13	ATF2	chr6:106611454-106613014	GM12878	blood:	n/a	n/a
14	ATF2	chr6:106611107-106612808	GM12878	blood:	n/a	n/a
15	ATF2	chr6:106594501-106595049	GM12878	blood:	n/a	n/a
16	ATF2	chr6:106589082-106590326	GM12878	blood:	n/a	n/a
17	ATF2	chr6:106629860-106630899	GM12878	blood:	n/a	n/a
18	ATF2	chr6:106593407-106593978	GM12878	blood:	n/a	n/a
19	ATF2	chr6:106720930-106721470	GM12878	blood:	n/a	n/a
20	ATF2	chr6:106668333-106668763	GM12878	blood:	n/a	n/a
21	ATF2	chr6:106654727-106655254	GM12878	blood:	n/a	n/a
22	ATF2	chr6:106589540-106590135	GM12878	blood:	n/a	n/a
23	BACH1	chr6:106594815-106594977	H1-hESC	embryonic stem cell:	n/a	n/a
24	BATF	chr6:106611348-106612762	GM12878	blood:	n/a	n/a
25	BATF	chr6:106593530-106593948	GM12878	blood:	n/a	n/a
26	BATF	chr6:106615190-106615627	GM12878	blood:	n/a	chr6:106615532-106615540
27	BATF	chr6:106594661-106595012	GM12878	blood:	n/a	chr6:106594818-106594829
28	BATF	chr6:106654917-106655130	GM12878	blood:	n/a	n/a
29	BATF	chr6:106692790-106693105	GM12878	blood:	n/a	chr6:106692813-106692822
30	BATF	chr6:106634554-106634840	GM12878	blood:	n/a	n/a
31	BATF	chr6:106611754-106612277	GM12878	blood:	n/a	n/a
32	BATF	chr6:106634566-106634898	GM12878	blood:	n/a	n/a
33	BATF	chr6:106692789-106693117	GM12878	blood:	n/a	chr6:106692813-106692822 chr6:106693099-106693108
34	BATF	chr6:106615159-106615768	GM12878	blood:	n/a	chr6:106615532-106615540
35	BATF	chr6:106630312-106630811	GM12878	blood:	n/a	chr6:106630390-106630401 chr6:106630651-106630660
36	BATF	chr6:106629862-106630903	GM12878	blood:	n/a	chr6:106630390-106630401 chr6:106630651-106630660
37	BATF	chr6:106593565-106593898	GM12878	blood:	n/a	n/a
38	BATF	chr6:106589670-106590071	GM12878	blood:	n/a	n/a
39	BATF	chr6:106654831-106655122	GM12878	blood:	n/a	n/a
40	BATF	chr6:106695714-106696014	GM12878	blood:	n/a	chr6:106695843-106695854
41	BATF	chr6:106629845-106630305	GM12878	blood:	n/a	n/a
42	BATF	chr6:106612318-106612733	GM12878	blood:	n/a	n/a
43	BCL11A	chr6:106611631-106612752	GM12878	blood:	n/a	chr6:106612502-106612511
44	BCL11A	chr6:106611762-106612198	GM12878	blood:	n/a	n/a
45	BCL11A	chr6:106630314-106630819	GM12878	blood:	n/a	n/a
46	BCL11A	chr6:106615142-106615725	GM12878	blood:	n/a	n/a
47	BCL11A	chr6:106695732-106696000	GM12878	blood:	n/a	n/a
48	BCL11A	chr6:106630357-106630703	GM12878	blood:	n/a	n/a
49	BCL11A	chr6:106612259-106612662	GM12878	blood:	n/a	chr6:106612502-106612511
50	BCL11A	chr6:106615172-106615612	GM12878	blood:	n/a	n/a

(count:919 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:106592760-106592810	AG04450	lung:	fetal
2	chr6:106630507-106630557	HepG2	liver:	n/a
3	chr6:106676568-106676618	SK-N-SH	brain:	n/a
4	chr6:106612002-106612052	IMR90	lung:	fetal
5	chr6:106592760-106592810	AG04450	lung:	fetal
6	chr6:106630507-106630557	HepG2	liver:	n/a
7	chr6:106676568-106676618	SK-N-SH	brain:	n/a
8	chr6:106612002-106612052	IMR90	lung:	fetal
9	chr6:106676568-106676618	LNCaP	prostate:	n/a
10	chr6:106612002-106612052	SK-N-SH_RA	brain:	n/a
11	chr6:106614417-106614467	AG04449	skin:	fetal
12	chr6:106614417-106614467	NHBE	bronchial:	n/a
13	chr6:106676237-106676287	HPAEpiC	pulmonary alveolar:	n/a
14	chr6:106603209-106603259	HPAEpiC	pulmonary alveolar:	n/a
15	chr6:106630507-106630557	HUVEC	blood vessel:	n/a
16	chr6:106702170-106702220	GM12891	blood:	n/a
17	chr6:106612002-106612052	Jurkat	blood:	n/a
18	chr6:106614417-106614467	HepG2	liver:	n/a
19	chr6:106614417-106614467	AG10803	skin:	n/a
20	chr6:106592760-106592810	GM12878	blood:	n/a
21	chr6:106612002-106612052	LNCaP	prostate:	n/a
22	chr6:106592760-106592810	SK-N-SH	brain:	n/a
23	chr6:106612002-106612052	HEEpiC	esophagus:	n/a
24	chr6:106630507-106630557	HEEpiC	esophagus:	n/a
25	chr6:106676237-106676287	MCF10A-Er-Src	breast:	n/a
26	chr6:106614417-106614467	IMR90	lung:	fetal
27	chr6:106709978-106710028	HNPCEpiC	eye:	n/a
28	chr6:106603209-106603259	AG09319	gingival:	n/a
29	chr6:106676237-106676287	HRCEpiC	kidney:	n/a
30	chr6:106702170-106702220	AG09319	gingival:	n/a
31	chr6:106709978-106710028	SKMC	muscle:	n/a
32	chr6:106634304-106634354	H1-hESC	embryonic stem cell:	embryo
33	chr6:106720478-106720528	HepG2	liver:	n/a
34	chr6:106594431-106594481	PrEC	prostate:	n/a
35	chr6:106652991-106653041	Hepatocyte	liver:	n/a
36	chr6:106676381-106676431	BE2_C	brain:	n/a
37	chr6:106614417-106614467	Hepatocyte	liver:	n/a
38	chr6:106594431-106594481	NHDF-neo	bronchial:	n/a
39	chr6:106634304-106634354	AoSMC	blood vessel:	n/a
40	chr6:106614417-106614467	H1-hESC	embryonic stem cell:	embryo
41	chr6:106676381-106676431	NT2-D1	testis:	n/a
42	chr6:106652991-106653041	U87	brain:	n/a
43	chr6:106614417-106614467	SK-N-MC	brain:	n/a
44	chr6:106676381-106676431	H1-hESC	embryonic stem cell:	embryo
45	chr6:106614417-106614467	GM12892	blood:	n/a
46	chr6:106634304-106634354	BE2_C	brain:	n/a
47	chr6:106596012-106596062	HRPEpiC	eye:	n/a
48	chr6:106676237-106676287	SK-N-SH	brain:	n/a
49	chr6:106676381-106676431	AG04450	lung:	fetal
50	chr6:106676237-106676287	SK-N-SH_RA	brain:	n/a

(count:87 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr6:106702583..106704653-chr6:106707003..106708997,2	K562	blood:
2	chr6:106641645..106644187-chr6:106644924..106646424,2	MCF-7	breast:
3	chr6:106668437..106670221-chr6:106672893..106674435,2	K562	blood:
4	chr17:41390684..41392218-chr6:106715223..106718203,2	K562	blood:
5	chr6:106721782..106723472-chr6:106727302..106728913,2	K562	blood:
6	chr6:106670839..106673074-chr6:106674446..106677171,2	K562	blood:
7	chr6:106689567..106692491-chr6:106708271..106710580,3	K562	blood:
8	chr6:106596720..106599715-chr6:106600989..106603238,3	K562	blood:
9	chr6:106616343..106618346-chr6:106620512..106623483,2	K562	blood:
10	chr6:106582718..106583982-chr6:106633824..106634839,6	MCF-7	breast:
11	chr6:106626394..106628287-chr6:106631327..106633229,2	MCF-7	breast:
12	chr6:106597065..106599830-chr6:106759450..106761439,2	MCF-7	breast:
13	chr6:106668437..106670221-chr6:106672893..106674435,2	K562	blood:
14	chr6:106626394..106628287-chr6:106631327..106633229,2	MCF-7	breast:
15	chr6:106604288..106607103-chr6:106607559..106610462,2	K562	blood:
16	chr6:106702743..106704638-chr6:106718970..106721930,2	MCF-7	breast:
17	chr6:106720896..106722569-chr6:106772183..106774793,2	MCF-7	breast:
18	chr6:106631186..106632770-chr6:106648714..106651514,2	K562	blood:
19	chr6:106622833..106624586-chr6:106626534..106629325,2	MCF-7	breast:
20	chr6:106582718..106583982-chr6:106633824..106634839,9	MCF-7	breast:
21	chr6:106638877..106640833-chr6:106648827..106651725,2	K562	blood:
22	chr6:106583053..106583633-chr6:106633874..106634792,3	MCF-7	breast:
23	chr6:106687715..106690914-chr6:106691161..106694111,3	K562	blood:
24	chr6:106702583..106704653-chr6:106707003..106708997,2	K562	blood:
25	chr6:106181287..106182030-chr6:106671102..106671759,4	MCF-7	breast:
26	chr6:106702821..106705726-chr6:106719179..106721244,2	K562	blood:
27	chr6:106609627..106612260-chr6:106633159..106635604,2	MCF-7	breast:
28	chr11:73660702..73662934-chr6:106607356..106609610,2	MCF-7	breast:
29	chr17:41380326..41382145-chr6:106715204..106716723,3	K562	blood:
30	chr6:106616343..106618346-chr6:106620512..106623483,2	K562	blood:
31	chr6:106716720..106717223-chr6:142365820..142366802,2	Hela-S3	cervix:
32	chr6:106670839..106673074-chr6:106674446..106677171,2	K562	blood:
33	chr17:41399331..41401905-chr6:106715204..106716723,2	K562	blood:
34	chr6:106648982..106651565-chr6:106654972..106657783,2	K562	blood:
35	chr6:106593873..106598543-chr6:106600901..106604368,5	K562	blood:
36	chr6:106592853..106595279-chr6:106597975..106600808,3	MCF-7	breast:
37	chr6:106702743..106704638-chr6:106718970..106721930,2	MCF-7	breast:
38	chr6:106636057..106638777-chr6:106646225..106649180,2	K562	blood:
39	chr17:41398972..41400831-chr6:106715223..106716723,3	K562	blood:
40	chr6:106606541..106608998-chr6:106613812..106616904,3	MCF-7	breast:
41	chr6:106689567..106692491-chr6:106708271..106710580,3	K562	blood:
42	chr6:106641645..106644187-chr6:106644924..106646424,2	MCF-7	breast:
43	chr6:106596720..106599715-chr6:106600989..106603238,3	K562	blood:
44	chr6:106602703..106605066-chr6:106622142..106624614,2	MCF-7	breast:
45	chr6:106640236..106641940-chr6:106644879..106647214,2	K562	blood:
46	chr6:106593873..106598543-chr6:106600901..106604368,5	K562	blood:
47	chr6:106607762..106610551-chr6:106612440..106614274,2	MCF-7	breast:
48	chr6:106606541..106608998-chr6:106613812..106616904,3	MCF-7	breast:
49	chr6:106721952..106723472-chr6:106725816..106728802,2	K562	blood:
50	chr6:106687715..106690914-chr6:106691161..106694111,3	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PRDM1-2	chr6:106616369-106616946	XLOC_005411
2	lnc-PRDM1-2	chr6:106629113-106629165	XLOC_005411

No data

Variant related genes	Relation type
ATG5	TF binding region
ATG5	CpG island
ENSG00000188825	chromatin interactions
ENSG00000187726	chromatin interactions
ENSG00000057663	chromatin interactions
ENSG00000269919	chromatin interactions
ENSG00000133316	chromatin interactions
ENSG00000236383	chromatin interactions
ENSG00000057657	chromatin interactions
PCDHA3	miRNA target sites

Extended variants
information (count: 4961 )
Associated
traits (count: 115 )

Variant overlapped rSNPs/rCNVs (count:4961 , 50 per page) page: 1 2 3 4 5 6 7 ... 100

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs528098764	chr6:106587631-106587632	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs551180197	chr6:106587665-106587666	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs369154450	chr6:106587666-106587667	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs144262985	chr6:106587871-106587872	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs533287802	chr6:106587875-106587876	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs371502855	chr6:106587968-106587969	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs531107807	chr6:106587969-106587970	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs551232593	chr6:106587980-106587981	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs116530970	chr6:106588001-106588002	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs114777313	chr6:106588023-106588024	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs547319164	chr6:106588040-106588041	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs566710225	chr6:106588100-106588101	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs147801954	chr6:106588133-106588134	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs558780311	chr6:106588168-106588169	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs575721461	chr6:106588195-106588196	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs186074014	chr6:106588246-106588247	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs556702728	chr6:106588260-106588261	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs375906545	chr6:106588263-106588264	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs573504653	chr6:106588306-106588307	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs78820501	chr6:106588327-106588328	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs1883232	chr6:106588431-106588432	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs189223972	chr6:106588435-106588436	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs182317243	chr6:106588438-106588439	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs56229253	chr6:106588445-106588446	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs534123414	chr6:106588544-106588545	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs7759216	chr6:106588614-106588615	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs530589137	chr6:106588629-106588630	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs143460545	chr6:106588664-106588665	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs561419254	chr6:106588671-106588672	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs34289240	chr6:106588680-106588681	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs187319092	chr6:106588715-106588716	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs567196835	chr6:106588740-106588741	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs532380195	chr6:106588748-106588749	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs7759385	chr6:106588770-106588771	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs569173112	chr6:106588778-106588779	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs554574443	chr6:106588789-106588790	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs554654184	chr6:106588795-106588796	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs567116225	chr6:106588803-106588804	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs6568431	chr6:106588806-106588807	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs35774796	chr6:106588832-106588833	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs140645287	chr6:106588854-106588855	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs544993211	chr6:106588860-106588861	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs558499153	chr6:106588873-106588874	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs34585924	chr6:106588919-106588920	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs145793252	chr6:106588938-106588939	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs367642334	chr6:106589018-106589019	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs533906731	chr6:106589030-106589031	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs544282395	chr6:106589031-106589032	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs554250140	chr6:106589055-106589056	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs370010909	chr6:106589070-106589071	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:115)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Prostate cancer	18632612	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Lung adenocarcinoma	21935476	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Burkitt''s lymphoma	20823134	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
Developmental delay	19490664	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Burkitt''s lymphoma	18698080	CNVD
Ovarian cancer	21720365	CNVD
Basal cell lymphoma	17170743	CNVD
Prostate cancer	16573809	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21785460	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Developmental delay	21147756	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16461572	CNVD
Neurocytoma	17123091	CNVD
Cancer	20164920	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Chronic lymphocytic leukemia	17805327	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Autism	17483303	CNVD
Chordoma	21602918	CNVD
Kartagener syndrome	16639409	CNVD
abnormal development	18461090	CNVD
Systemic lupus erythematosus	19220326	CNVD
Cancer	17160897	CNVD
Autism	19546859	CNVD
Schizophrenia	19546859	CNVD
Tourette syndrome	19546859	CNVD
Acute lymphoblastic leukemia	17229543	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17133270	CNVD
Follicular lymphoma	18703704	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:2638 , 50 per page) page: 1 2 3 4 5 6 7 ... 53

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:106581400-106589400	Weak transcription	Psoas Muscle	Psoas
2	chr6:106583200-106593600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:106583600-106589200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr6:106583600-106589200	Weak transcription	NH-A	brain
5	chr6:106583800-106587800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:106583800-106590600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:106584200-106588000	Weak transcription	NHDF-Ad	bronchial
8	chr6:106584200-106589200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:106584200-106589200	Weak transcription	HSMMtube	muscle
10	chr6:106584400-106589200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:106584400-106589200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr6:106584400-106589200	Weak transcription	K562	blood
13	chr6:106584400-106590200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr6:106584400-106593600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:106586200-106589200	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr6:106586400-106590000	Weak transcription	Esophagus	oesophagus
17	chr6:106586600-106590400	Weak transcription	Placenta	Placenta
18	chr6:106586800-106588400	Weak transcription	GM12878-XiMat	blood
19	chr6:106587800-106588000	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr6:106587800-106589200	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr6:106588000-106588200	Enhancers	NHDF-Ad	bronchial
22	chr6:106588200-106588600	Weak transcription	NHDF-Ad	bronchial
23	chr6:106588400-106589200	Enhancers	GM12878-XiMat	blood
24	chr6:106588600-106588800	Enhancers	NHDF-Ad	bronchial
25	chr6:106588600-106591200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr6:106588600-106592000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr6:106588600-106594000	Enhancers	Primary T cells fromperipheralblood	blood
28	chr6:106588600-106594200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:106588800-106589400	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr6:106588800-106590400	Weak transcription	NHDF-Ad	bronchial
31	chr6:106588800-106590600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr6:106588800-106592000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr6:106589000-106589600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
34	chr6:106589000-106590400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr6:106589200-106589400	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr6:106589200-106589400	Enhancers	Rectal Mucosa Donor 29	rectum
37	chr6:106589200-106589400	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr6:106589200-106589400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
39	chr6:106589200-106589600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr6:106589200-106589600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
41	chr6:106589200-106589600	Flanking Active TSS	GM12878-XiMat	blood
42	chr6:106589200-106590000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
43	chr6:106589200-106590000	Enhancers	NH-A	brain
44	chr6:106589200-106590200	Enhancers	Thymus	Thymus
45	chr6:106589200-106590400	Enhancers	Fetal Heart	heart
46	chr6:106589200-106590400	Enhancers	Left Ventricle	heart
47	chr6:106589200-106590600	Enhancers	Spleen	Spleen
48	chr6:106589200-106590600	Enhancers	K562	blood
49	chr6:106589200-106590600	Enhancers	NHEK	skin
50	chr6:106589200-106590800	Enhancers	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links