Variant report

Variant	rs34289240
Chromosome Location	chr6:106588680-106588681
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:106555778..106558773-chr6:106588143..106590176,2	K562	blood:
2	chr6:106582911..106584743-chr6:106586663..106589523,3	K562	blood:
3	chr6:106582685..106586548-chr6:106586639..106589895,5	K562	blood:
4	chr6:106554917..106557278-chr6:106588143..106590911,3	K562	blood:
5	chr6:106587956..106591795-chr6:106592518..106598079,7	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13191943	1.00[AMR][1000 genomes]
rs13203112	1.00[AMR][1000 genomes]
rs35601161	1.00[AMR][1000 genomes]
rs35640124	1.00[AMR][1000 genomes]
rs35844805	1.00[AMR][1000 genomes]
rs71572293	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932155	chr6:106281728-107030467	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1025231	chr6:106451012-106634389	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv830755	chr6:106461705-106624202	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1025900	chr6:106529777-106898421	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv1018270	chr6:106531658-106908606	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv538399	chr6:106531658-106908606	Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	esv1832544	chr6:106539914-106642993	Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv1035110	chr6:106557281-106802212	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv538400	chr6:106557281-106802212	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	nsv1022855	chr6:106570926-106802072	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
11	nsv538401	chr6:106570926-106802072	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
12	nsv1019265	chr6:106587627-106727591	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	nsv538402	chr6:106587627-106727591	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:106581400-106589400	Weak transcription	Psoas Muscle	Psoas
2	chr6:106583200-106593600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:106583600-106589200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr6:106583600-106589200	Weak transcription	NH-A	brain
5	chr6:106583800-106590600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:106584200-106589200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr6:106584200-106589200	Weak transcription	HSMMtube	muscle
8	chr6:106584400-106589200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:106584400-106589200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:106584400-106589200	Weak transcription	K562	blood
11	chr6:106584400-106590200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr6:106584400-106593600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:106586200-106589200	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr6:106586400-106590000	Weak transcription	Esophagus	oesophagus
15	chr6:106586600-106590400	Weak transcription	Placenta	Placenta
16	chr6:106587800-106589200	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr6:106588400-106589200	Enhancers	GM12878-XiMat	blood
18	chr6:106588600-106588800	Enhancers	NHDF-Ad	bronchial
19	chr6:106588600-106591200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr6:106588600-106592000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr6:106588600-106594000	Enhancers	Primary T cells fromperipheralblood	blood
22	chr6:106588600-106594200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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