Variant report

Variant	nsv1022965
Chromosome Location	chr6:145374851-145635385
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:34)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:34 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:144906108..144907031-chr6:145535323..145536185,3	MCF-7	breast:
2	chr6:145547168..145549367-chr6:145552158..145554924,2	MCF-7	breast:
3	chr1:81845719..81846637-chr6:145435298..145436075,2	MCF-7	breast:
4	chr6:145626405..145629142-chr6:145641079..145643554,2	MCF-7	breast:
5	chr6:145601721..145603777-chr6:145606644..145608326,2	K562	blood:
6	chr6:145547168..145549367-chr6:145552158..145554924,2	MCF-7	breast:
7	chr6:145586529..145589505-chr6:145589669..145591827,2	MCF-7	breast:
8	chr6:145349488..145350116-chr6:145535389..145536274,2	MCF-7	breast:
9	chr6:145396467..145397056-chr6:145535409..145536250,2	MCF-7	breast:
10	chr6:145422459..145425405-chr6:145430623..145432232,2	MCF-7	breast:
11	chr6:144902851..144903376-chr6:145535252..145535879,2	MCF-7	breast:
12	chr2:216767388..216769620-chr6:145605820..145607827,2	MCF-7	breast:
13	chr6:145422459..145425405-chr6:145430623..145432232,2	MCF-7	breast:
14	chr6:145458549..145459292-chr6:145535350..145535961,2	MCF-7	breast:
15	chr6:145535549..145536107-chr6:145954859..145955499,2	MCF-7	breast:
16	chr21:22732799..22733441-chr6:145481975..145482791,2	MCF-7	breast:
17	chr6:144902620..144903603-chr6:145535345..145536293,3	K562	blood:
18	chr6:145530397..145532118-chr6:145532135..145534427,2	K562	blood:
19	chr6:145601721..145603777-chr6:145606644..145608326,2	K562	blood:
20	chr6:145405009..145407023-chr6:145407412..145410663,3	MCF-7	breast:
21	chr6:145530397..145532118-chr6:145532135..145534427,2	K562	blood:
22	chr6:145416991..145417491-chr7:156776706..156777307,2	MCF-7	breast:
23	chr6:145529055..145531591-chr6:145532169..145534485,2	MCF-7	breast:
24	chr6:145215634..145217242-chr6:145456840..145459220,2	MCF-7	breast:
25	chr6:145430494..145433220-chr6:145468971..145470857,2	MCF-7	breast:
26	chr6:145458549..145459292-chr6:145535350..145535961,2	MCF-7	breast:
27	chr6:145430494..145433220-chr6:145468971..145470857,2	MCF-7	breast:
28	chr6:144906202..144908261-chr6:145458578..145460342,2	MCF-7	breast:
29	chr6:145353179..145355811-chr6:145521442..145523143,2	K562	blood:
30	chr6:144905902..144906972-chr6:145534873..145536365,4	K562	blood:
31	chr6:145529055..145531591-chr6:145532169..145534485,2	MCF-7	breast:
32	chr6:145396467..145397056-chr6:145535409..145536250,2	MCF-7	breast:
33	chr6:145405009..145407023-chr6:145407412..145410663,3	MCF-7	breast:
34	chr6:145586529..145589505-chr6:145589669..145591827,2	MCF-7	breast:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-UTRN-2	chr6:145475560-145475587	XLOC_005493
2	lnc-UTRN-2	chr6:145475559-145475587	NONHSAT115389
3	lnc-UTRN-2	chr6:145469832-145470278	XLOC_005493
4	lnc-UTRN-2	chr6:145469831-145470278	NONHSAT115389

No data

Variant related genes	Relation type
FADS2	miRNA target sites
HEATR7A	miRNA target sites

Extended variants
information (count: 6608 )
Associated
traits (count: 78 )

Variant overlapped rSNPs/rCNVs (count:6608 , 50 per page) page: 1 2 3 4 5 6 7 ... 133

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9497180	chr6:145374851-145374852	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs570648948	chr6:145374879-145374880	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs540077937	chr6:145374912-145374913	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs553625115	chr6:145374928-145374929	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs528303672	chr6:145374947-145374948	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs546661650	chr6:145374985-145374986	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs568203075	chr6:145374995-145374996	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs182559762	chr6:145375005-145375006	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs186885952	chr6:145375063-145375064	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs570327962	chr6:145375070-145375071	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs537768129	chr6:145375103-145375104	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs577326672	chr6:145375166-145375167	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs573412408	chr6:145375182-145375183	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs141420488	chr6:145375185-145375186	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs189668107	chr6:145375190-145375191	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs553427420	chr6:145375199-145375200	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs183406181	chr6:145375214-145375215	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs150393209	chr6:145375215-145375216	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs563358342	chr6:145375262-145375263	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs138408816	chr6:145375283-145375284	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs542520891	chr6:145375304-145375305	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs188054891	chr6:145375351-145375352	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs9390274	chr6:145375386-145375387	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs528281883	chr6:145375391-145375392	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs546528083	chr6:145375396-145375397	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs6570671	chr6:145375413-145375414	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs77203670	chr6:145375420-145375421	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs74548539	chr6:145375424-145375425	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs77679719	chr6:145375426-145375427	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs77716390	chr6:145375447-145375448	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs140493550	chr6:145375449-145375450	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs550564259	chr6:145375462-145375463	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs77912745	chr6:145375463-145375464	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs78226983	chr6:145375470-145375471	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs568845919	chr6:145375485-145375486	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs74990907	chr6:145375486-145375487	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs74891451	chr6:145375487-145375488	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs76795513	chr6:145375490-145375491	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs79146008	chr6:145375491-145375492	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs80144563	chr6:145375492-145375493	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs563701640	chr6:145375498-145375499	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs193250603	chr6:145375499-145375500	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs77074183	chr6:145375501-145375502	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs74919867	chr6:145375504-145375505	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs75709647	chr6:145375512-145375513	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs78083071	chr6:145375514-145375515	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs79067295	chr6:145375515-145375516	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs76090577	chr6:145375518-145375519	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs75716232	chr6:145375536-145375537	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs79573777	chr6:145375542-145375543	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:78)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Autism	22495311	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Breast cancer	17603634	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Follicular lymphoma	18703704	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Malignant melanoma	17260012	CNVD
Prostate cancer	18632612	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Endocrine pancreatic tumor	17914106	CNVD
Soft tissue tumor	16732325	CNVD
Burkitt''s lymphoma	19759907	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:735 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145366200-145378400	Weak transcription	Psoas Muscle	Psoas
2	chr6:145373200-145376000	Weak transcription	Liver	Liver
3	chr6:145374600-145375000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:145374800-145377600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr6:145376000-145378000	Enhancers	Liver	Liver
6	chr6:145377800-145378000	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr6:145383400-145383600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:145383400-145385000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:145383600-145388200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:145384000-145385200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:145385000-145388600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:145385200-145388200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:145386200-145391800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:145388000-145393000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:145388000-145393200	Enhancers	NHDF-Ad	bronchial
16	chr6:145388200-145389400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:145388200-145389400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:145388200-145389400	Enhancers	HMEC	breast
19	chr6:145388200-145389400	Enhancers	Osteobl	bone
20	chr6:145388200-145389600	Enhancers	Muscle Satellite Cultured Cells	--
21	chr6:145388200-145393200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:145388600-145389400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:145388800-145389000	Enhancers	NHEK	skin
24	chr6:145388800-145389200	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr6:145388800-145389400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:145388800-145389400	Enhancers	Hela-S3	cervix
27	chr6:145389000-145389400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:145389000-145389400	Enhancers	NHLF	lung
29	chr6:145389400-145390600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:145389400-145391000	Weak transcription	Osteobl	bone
31	chr6:145389400-145391200	Weak transcription	NHLF	lung
32	chr6:145389400-145391400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr6:145389400-145391800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:145389400-145391800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr6:145389400-145391800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:145389400-145391800	Weak transcription	HMEC	breast
37	chr6:145389600-145391400	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr6:145390600-145390800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr6:145390600-145393000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr6:145390800-145391800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr6:145390800-145392800	Enhancers	HSMMtube	muscle
42	chr6:145391000-145393000	Enhancers	Osteobl	bone
43	chr6:145391200-145393000	Enhancers	NHLF	lung
44	chr6:145391400-145392600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr6:145391400-145393000	Enhancers	Muscle Satellite Cultured Cells	--
46	chr6:145391600-145392000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr6:145391800-145392600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr6:145391800-145392600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr6:145391800-145392800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr6:145391800-145393000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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