Variant report

Variant	rs6570671
Chromosome Location	chr6:145375413-145375414
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1104835	0.90[ASN][1000 genomes]
rs12661364	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13204241	0.92[ASN][1000 genomes]
rs1933930	0.92[ASN][1000 genomes]
rs1953813	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1953814	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2153143	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35086736	0.84[AMR][1000 genomes]
rs35757136	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4896770	0.83[AMR][1000 genomes]
rs4896774	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs492500	0.82[ASN][1000 genomes]
rs497252	0.87[AMR][1000 genomes]
rs521141	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs577157	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs582034	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs582981	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs644113	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs646892	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs658393	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs673979	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs689103	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6940861	0.86[ASN][1000 genomes]
rs71564499	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs71564500	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7760070	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs946316	0.86[ASN][1000 genomes]
rs953803	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs953804	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv886742	chr6:145269757-145376903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv1022965	chr6:145374851-145635385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145366200-145378400	Weak transcription	Psoas Muscle	Psoas
2	chr6:145373200-145376000	Weak transcription	Liver	Liver
3	chr6:145374800-145377600	Weak transcription	Monocytes-CD14+_RO01746	blood

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