Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:145358735..145362713-chr6:145368471..145370231,3	K562	blood:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1104835	0.84[AMR][1000 genomes]
rs12661364	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13198734	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13204241	0.83[AMR][1000 genomes]
rs13215629	0.81[EUR][1000 genomes]
rs1933930	0.83[AMR][1000 genomes]
rs1953813	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1953814	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2153143	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35086736	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35757136	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4896770	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4896774	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs497252	0.85[AMR][1000 genomes]
rs521141	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs577157	0.84[AMR][1000 genomes]
rs582981	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs644113	0.85[AMR][1000 genomes]
rs646892	0.81[AMR][1000 genomes]
rs6570671	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs658393	0.82[AMR][1000 genomes]
rs673979	0.82[AMR][1000 genomes]
rs6940861	0.82[AMR][1000 genomes]
rs71564500	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7760070	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs946316	0.84[AMR][1000 genomes]
rs953803	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs953804	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv886742	chr6:145269757-145376903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145358600-145359800	Weak transcription	NHLF	lung
2	chr6:145358600-145362000	Weak transcription	Fetal Heart	heart
3	chr6:145359000-145359600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:145359200-145359600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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