Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12661364	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1953813	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1953814	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2153143	0.85[AMR][1000 genomes]
rs35086736	0.82[AMR][1000 genomes]
rs35757136	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4896770	0.83[AMR][1000 genomes]
rs4896774	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs492500	0.82[EUR][1000 genomes]
rs497252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs501479	0.84[ASN][1000 genomes]
rs503345	0.84[ASN][1000 genomes]
rs521141	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs577157	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs582981	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs646892	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570671	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs658393	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs673979	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71564499	0.85[AMR][1000 genomes]
rs71564500	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7760070	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs953803	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs953804	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1022965	chr6:145374851-145635385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145383600-145388200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:145385000-145388600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:145385200-145388200	Weak transcription	Muscle Satellite Cultured Cells	--

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