Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1104835	0.83[AMR][1000 genomes]
rs12661364	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13198734	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13204241	0.82[AMR][1000 genomes]
rs13215629	0.81[EUR][1000 genomes]
rs1933930	0.82[AMR][1000 genomes]
rs1953813	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1953814	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2153143	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35757136	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4896770	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4896774	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs497252	0.82[AMR][1000 genomes]
rs521141	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs577157	0.81[AMR][1000 genomes]
rs582981	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs644113	0.82[AMR][1000 genomes]
rs6570671	0.84[AMR][1000 genomes]
rs6940861	0.81[AMR][1000 genomes]
rs71564499	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71564500	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7760070	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs946316	0.83[AMR][1000 genomes]
rs953803	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs953804	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv886742	chr6:145269757-145376903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145356000-145357000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:145356200-145357000	Weak transcription	Liver	Liver
3	chr6:145356200-145357200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:145356200-145357200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:145356200-145357200	Weak transcription	NHDF-Ad	bronchial
6	chr6:145356200-145357800	Weak transcription	NHLF	lung
7	chr6:145356600-145357600	Weak transcription	NH-A	brain

Quick Search: