Variant report

Variant	rs1933930
Chromosome Location	chr6:145368228-145368229
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:145345034..145347035-chr6:145367546..145369741,2	K562	blood:
2	chr6:145365029..145367314-chr6:145367945..145370430,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1104835	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12661364	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13204241	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1953813	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1953814	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2153141	0.82[EUR][1000 genomes]
rs2153142	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2153143	0.83[AMR][1000 genomes]
rs2328631	0.81[EUR][1000 genomes]
rs2328632	0.82[EUR][1000 genomes]
rs35086736	0.82[AMR][1000 genomes]
rs35757136	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4896770	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4896774	0.82[AMR][1000 genomes]
rs492500	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs521141	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs582034	0.81[ASN][1000 genomes]
rs582981	0.82[AMR][1000 genomes]
rs6570671	0.92[ASN][1000 genomes]
rs689103	0.82[ASN][1000 genomes]
rs6919579	0.81[AFR][1000 genomes]
rs6921538	0.81[EUR][1000 genomes]
rs6940861	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71564499	0.83[AMR][1000 genomes]
rs71564500	0.94[ASN][1000 genomes]
rs73779527	0.81[AFR][1000 genomes]
rs73779528	0.81[AFR][1000 genomes]
rs7760070	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7765492	0.82[EUR][1000 genomes]
rs946316	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs953803	0.85[AMR][1000 genomes]
rs953804	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv886742	chr6:145269757-145376903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145364800-145368400	Enhancers	NHDF-Ad	bronchial
2	chr6:145366200-145368800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:145366200-145378400	Weak transcription	Psoas Muscle	Psoas
4	chr6:145366400-145368800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:145366400-145372600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr6:145366400-145374600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr6:145366600-145368800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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