Variant report

Variant	rs13204241
Chromosome Location	chr6:145366647-145366648
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:145365029..145367314-chr6:145367945..145370430,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1104835	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12661364	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1933930	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1953813	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1953814	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2153141	0.82[EUR][1000 genomes]
rs2153142	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2153143	0.83[AMR][1000 genomes]
rs2328631	0.81[EUR][1000 genomes]
rs2328632	0.82[EUR][1000 genomes]
rs35086736	0.82[AMR][1000 genomes]
rs35757136	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4896770	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4896774	0.82[AMR][1000 genomes]
rs492500	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs521141	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs582034	0.81[ASN][1000 genomes]
rs582981	0.82[AMR][1000 genomes]
rs6570671	0.92[ASN][1000 genomes]
rs689103	0.82[ASN][1000 genomes]
rs6921538	0.81[EUR][1000 genomes]
rs6940861	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71564499	0.83[AMR][1000 genomes]
rs71564500	0.94[ASN][1000 genomes]
rs73779524	0.81[AFR][1000 genomes]
rs73779526	0.81[AFR][1000 genomes]
rs7760070	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7765492	0.82[EUR][1000 genomes]
rs946316	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs953803	0.85[AMR][1000 genomes]
rs953804	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv886742	chr6:145269757-145376903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145364400-145367400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:145364800-145368400	Enhancers	NHDF-Ad	bronchial
3	chr6:145365000-145366800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:145365000-145367800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:145365200-145366800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:145365400-145366800	Enhancers	HUVEC	blood vessel
7	chr6:145365600-145366800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr6:145365600-145367000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:145365600-145367000	Enhancers	NH-A	brain
10	chr6:145365800-145366800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:145365800-145367000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr6:145366000-145367000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr6:145366200-145366800	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr6:145366200-145368800	Weak transcription	Primary hematopoietic stem cells	blood
15	chr6:145366200-145378400	Weak transcription	Psoas Muscle	Psoas
16	chr6:145366400-145368800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:145366400-145372600	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr6:145366400-145374600	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr6:145366600-145367000	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr6:145366600-145368800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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