Variant report

Variant	rs2153141
Chromosome Location	chr6:145365592-145365593
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:145365029..145367314-chr6:145367945..145370430,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1104835	0.81[EUR][1000 genomes]
rs11155393	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13204241	0.82[EUR][1000 genomes]
rs1933930	0.82[EUR][1000 genomes]
rs2153142	0.90[EUR][1000 genomes]
rs2185169	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2328631	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2328632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921538	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6941009	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7765492	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484945	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv886742	chr6:145269757-145376903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145364000-145366600	Enhancers	Fetal Heart	heart
2	chr6:145364400-145367400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:145364800-145365800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:145364800-145365800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:145364800-145365800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr6:145364800-145366400	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr6:145364800-145368400	Enhancers	NHDF-Ad	bronchial
8	chr6:145365000-145366000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:145365000-145366000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr6:145365000-145366000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr6:145365000-145366400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:145365000-145366800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:145365000-145367800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:145365200-145365600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr6:145365200-145365800	Enhancers	Left Ventricle	heart
16	chr6:145365200-145366000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr6:145365200-145366000	Enhancers	NHLF	lung
18	chr6:145365200-145366200	Enhancers	Psoas Muscle	Psoas
19	chr6:145365200-145366200	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr6:145365200-145366400	Enhancers	Muscle Satellite Cultured Cells	--
21	chr6:145365200-145366400	Enhancers	Fetal Stomach	stomach
22	chr6:145365200-145366800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:145365400-145365600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:145365400-145365800	Enhancers	Lung	lung
25	chr6:145365400-145366200	Enhancers	Primary hematopoietic stem cells	blood
26	chr6:145365400-145366400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:145365400-145366400	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr6:145365400-145366400	Enhancers	Osteobl	bone
29	chr6:145365400-145366600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:145365400-145366800	Enhancers	HUVEC	blood vessel

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