Variant report

Variant	rs6921538
Chromosome Location	chr6:145364923-145364924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1104835	0.81[EUR][1000 genomes]
rs11155393	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13204241	0.81[EUR][1000 genomes]
rs1933930	0.81[EUR][1000 genomes]
rs2153141	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153142	0.89[EUR][1000 genomes]
rs2185169	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2328631	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2328632	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6941009	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7765492	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484945	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv886742	chr6:145269757-145376903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145364000-145365000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:145364000-145366600	Enhancers	Fetal Heart	heart
3	chr6:145364200-145365200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr6:145364400-145365000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr6:145364400-145367400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:145364600-145365000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:145364800-145365000	Enhancers	H9 Cell Line	embryonic stem cell
8	chr6:145364800-145365200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr6:145364800-145365800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:145364800-145365800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr6:145364800-145365800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:145364800-145366400	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr6:145364800-145368400	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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