Variant report

Variant	nsv1024483
Chromosome Location	chr6:26429262-26465384
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:752)
CpG islands
(count:1098)
Chromatin interactive
region (count:46)
LncRNA
region (count:14)
Mature miRNA
region (count: 0)
miRNA target
sites (count:1)

(count:752 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:26440731-26440735	K562	blood:	n/a	n/a
2	ARID3A	chr6:26457836-26458207	HepG2	liver:	n/a	n/a
3	ARID3A	chr6:26440421-26441008	HepG2	liver:	n/a	n/a
4	ATF1	chr6:26440527-26440834	K562	blood:	n/a	n/a
5	ATF1	chr6:26457908-26458286	K562	blood:	n/a	n/a
6	ATF2	chr6:26446043-26446908	GM12878	blood:	n/a	n/a
7	ATF2	chr6:26446081-26446917	GM12878	blood:	n/a	n/a
8	BATF	chr6:26446580-26446863	GM12878	blood:	n/a	n/a
9	BATF	chr6:26446083-26446930	GM12878	blood:	n/a	n/a
10	BATF	chr6:26446214-26446536	GM12878	blood:	n/a	n/a
11	BCL11A	chr6:26446237-26446481	GM12878	blood:	n/a	n/a
12	BCL11A	chr6:26446136-26446582	GM12878	blood:	n/a	n/a
13	BCL3	chr6:26446139-26446570	GM12878	blood:	n/a	n/a
14	BCLAF1	chr6:26446005-26446607	GM12878	blood:	n/a	n/a
15	BHLHE40	chr6:26457940-26458334	K562	blood:	n/a	n/a
16	BHLHE40	chr6:26446145-26446565	GM12878	blood:	n/a	n/a
17	BHLHE40	chr6:26440568-26440767	K562	blood:	n/a	n/a
18	BHLHE40	chr6:26458552-26458563	K562	blood:	n/a	n/a
19	BHLHE40	chr6:26457911-26458325	GM12878	blood:	n/a	n/a
20	BHLHE40	chr6:26440473-26441150	GM12878	blood:	n/a	n/a
21	BHLHE40	chr6:26432223-26432270	K562	blood:	n/a	n/a
22	BHLHE40	chr6:26457962-26458226	HepG2	liver:	n/a	n/a
23	BRCA1	chr6:26458311-26458434	HepG2	liver:	n/a	n/a
24	BRCA1	chr6:26440558-26440819	Hela-S3	cervix:	n/a	n/a
25	BRCA1	chr6:26457937-26458234	Hela-S3	cervix:	n/a	n/a
26	CBX3	chr6:26457315-26458711	K562	blood:	n/a	n/a
27	CBX3	chr6:26433966-26434229	K562	blood:	n/a	n/a
28	CBX3	chr6:26433888-26434282	K562	blood:	n/a	n/a
29	CCNT2	chr6:26458339-26458524	K562	blood:	n/a	n/a
30	CCNT2	chr6:26438012-26438147	K562	blood:	n/a	n/a
31	CEBPB	chr6:26438406-26438484	IMR90	lung:	n/a	chr6:26438430-26438441
32	CEBPB	chr6:26433120-26433394	IMR90	lung:	n/a	n/a
33	CEBPB	chr6:26459274-26459575	IMR90	lung:	n/a	chr6:26459425-26459438 chr6:26459426-26459437
34	CEBPB	chr6:26459312-26459525	HepG2	liver:	n/a	chr6:26459425-26459438 chr6:26459426-26459437
35	CEBPB	chr6:26438275-26438595	K562	blood:	n/a	chr6:26438430-26438441
36	CEBPB	chr6:26440441-26440608	HepG2	liver:	n/a	n/a
37	CEBPB	chr6:26437331-26437604	HepG2	liver:	n/a	chr6:26437482-26437493 chr6:26437481-26437492 chr6:26437483-26437492
38	CEBPB	chr6:26432745-26433059	Hela-S3	cervix:	n/a	n/a
39	CEBPB	chr6:26440442-26440755	Hela-S3	cervix:	n/a	chr6:26440696-26440704
40	CEBPB	chr6:26437378-26437610	A549	lung:	n/a	chr6:26437482-26437493 chr6:26437481-26437492 chr6:26437483-26437492
41	CEBPB	chr6:26438125-26438588	K562	blood:	n/a	chr6:26438430-26438441
42	CEBPB	chr6:26433012-26433365	HepG2	liver:	n/a	n/a
43	CEBPB	chr6:26437424-26437559	K562	blood:	n/a	chr6:26437482-26437493 chr6:26437481-26437492 chr6:26437483-26437492
44	CEBPB	chr6:26459435-26459456	K562	blood:	n/a	n/a
45	CEBPB	chr6:26446124-26446753	GM12878	blood:	n/a	n/a
46	CEBPB	chr6:26438295-26438597	HepG2	liver:	n/a	chr6:26438430-26438441
47	CEBPB	chr6:26440119-26441091	GM12878	blood:	n/a	chr6:26440696-26440704
48	CHD1	chr6:26446192-26446347	GM12878	blood:	n/a	n/a
49	CHD1	chr6:26458251-26458394	GM12878	blood:	n/a	n/a
50	CHD2	chr6:26458294-26458429	HepG2	liver:	n/a	n/a

(count:1098 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:26458121-26458171	GM19239	blood:	n/a
2	chr6:26458093-26458143	SKMC	muscle:	n/a
3	chr6:26446387-26446437	MCF10A-Er-Src	breast:	n/a
4	chr6:26446387-26446437	HAEpiC	amniotic membrane:	n/a
5	chr6:26458326-26458376	U87	brain:	n/a
6	chr6:26458013-26458063	GM19239	blood:	n/a
7	chr6:26458121-26458171	NB4	blood:	n/a
8	chr6:26440340-26440390	AoSMC	blood vessel:	n/a
9	chr6:26458213-26458263	Hela-S3	cervix:	n/a
10	chr6:26458121-26458171	Hepatocyte	liver:	n/a
11	chr6:26457928-26457978	SAEC	small airway:	n/a
12	chr6:26458189-26458239	Hepatocyte	liver:	n/a
13	chr6:26446387-26446437	HCF	heart:	n/a
14	chr6:26458213-26458263	PANC-1	pancreas:	n/a
15	chr6:26458121-26458171	K562	blood:	n/a
16	chr6:26440101-26440151	HPAEpiC	pulmonary alveolar:	n/a
17	chr6:26440101-26440151	U87	brain:	n/a
18	chr6:26458213-26458263	GM06990	blood:	n/a
19	chr6:26458213-26458263	MCF-7	breast:	n/a
20	chr6:26452680-26452730	LNCaP	prostate:	n/a
21	chr6:26440101-26440151	HL-60	blood:	n/a
22	chr6:26458189-26458239	AG09309	skin:	n/a
23	chr6:26457928-26457978	HCF	heart:	n/a
24	chr6:26458121-26458171	AG04449	skin:	fetal
25	chr6:26457928-26457978	Jurkat	blood:	n/a
26	chr6:26440101-26440151	SKMC	muscle:	n/a
27	chr6:26457984-26458034	SAEC	small airway:	n/a
28	chr6:26452680-26452730	HNPCEpiC	eye:	n/a
29	chr6:26446387-26446437	U87	brain:	n/a
30	chr6:26452680-26452730	BJ	skin:	n/a
31	chr6:26459986-26460036	HCM	heart:	n/a
32	chr6:26458189-26458239	Caco-2	colon:	n/a
33	chr6:26458326-26458376	HCT-116	colon:	n/a
34	chr6:26456230-26456280	HRE	kidney:	n/a
35	chr6:26440340-26440390	HEEpiC	esophagus:	n/a
36	chr6:26440101-26440151	MCF10A-Er-Src	breast:	n/a
37	chr6:26440610-26440660	K562	blood:	n/a
38	chr6:26446387-26446437	NH-A	brain:	n/a
39	chr6:26459986-26460036	H1-hESC	embryonic stem cell:	embryo
40	chr6:26440610-26440660	SK-N-SH	brain:	n/a
41	chr6:26458013-26458063	HCPEpiC	choroid plexus:	n/a
42	chr6:26442290-26442340	HCT-116	colon:	n/a
43	chr6:26456230-26456280	GM06990	blood:	n/a
44	chr6:26457928-26457978	HepG2	liver:	n/a
45	chr6:26440101-26440151	SK-N-SH	brain:	n/a
46	chr6:26456230-26456280	AG04450	lung:	fetal
47	chr6:26442290-26442340	SK-N-SH	brain:	n/a
48	chr6:26442290-26442340	GM19239	blood:	n/a
49	chr6:26457984-26458034	A549	lung:	n/a
50	chr6:26458121-26458171	HIPEpiC	eye:	n/a

(count:46 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:26462941..26465022-chr6:26475685..26477185,2	K562	blood:
2	chr6:26420361..26423136-chr6:26455979..26458036,3	MCF-7	breast:
3	chr6:26435741..26437513-chr6:26437862..26439731,2	MCF-7	breast:
4	chr6:26447799..26450389-chr6:26451131..26452755,2	K562	blood:
5	chr6:26158283..26160740-chr6:26434619..26436280,2	K562	blood:
6	chr6:26365087..26367638-chr6:26438423..26440461,2	K562	blood:
7	chr6:26441674..26444658-chr6:26456493..26459926,5	K562	blood:
8	chr6:26436348..26437965-chr6:26445260..26447291,2	K562	blood:
9	chr6:26419843..26421610-chr6:26453709..26456222,2	K562	blood:
10	chr6:26445132..26448422-chr6:26449156..26450907,3	MCF-7	breast:
11	chr6:26204630..26206245-chr6:26437360..26439322,2	K562	blood:
12	chr6:26408794..26411203-chr6:26449353..26451664,2	K562	blood:
13	chr6:26204619..26206615-chr6:26455801..26457917,2	K562	blood:
14	chr6:26432568..26435135-chr6:26469851..26472610,2	K562	blood:
15	chr6:26410362..26412070-chr6:26433170..26434704,2	K562	blood:
16	chr6:26436944..26439158-chr6:26458061..26459676,2	MCF-7	breast:
17	chr6:26429586..26431412-chr6:26436567..26439801,3	K562	blood:
18	chr6:26449553..26453974-chr6:26454911..26459271,5	K562	blood:
19	chr6:26203411..26206130-chr6:26436411..26439322,2	K562	blood:
20	chr6:26435741..26437513-chr6:26437862..26439731,2	MCF-7	breast:
21	chr6:26382632..26385246-chr6:26444412..26446084,2	K562	blood:
22	chr6:26158606..26161579-chr6:26427700..26429391,2	K562	blood:
23	chr6:26284595..26286782-chr6:26439423..26441341,2	K562	blood:
24	chr6:26422974..26425534-chr6:26428185..26431650,3	K562	blood:
25	chr6:26202174..26206210-chr6:26451824..26455536,3	K562	blood:
26	chr6:26341644..26342483-chr6:26450003..26451206,4	MCF-7	breast:
27	chr6:26449553..26453974-chr6:26454911..26459271,5	K562	blood:
28	chr6:26456959..26459749-chr6:26461329..26463001,2	MCF-7	breast:
29	chr6:26449858..26453821-chr6:26456459..26459528,5	K562	blood:
30	chr6:26193865..26195647-chr6:26428067..26430005,2	K562	blood:
31	chr6:26445132..26448422-chr6:26449156..26450907,3	MCF-7	breast:
32	chr6:26433270..26434795-chr6:26457086..26458602,2	MCF-7	breast:
33	chr6:26440449..26443327-chr6:26444566..26448075,3	K562	blood:
34	chr6:26431968..26434782-chr6:26519398..26522131,2	MCF-7	breast:
35	chr6:26158231..26160273-chr6:26456660..26458707,2	K562	blood:
36	chr6:26419994..26421593-chr6:26434253..26437135,2	K562	blood:
37	chr6:26421705..26424532-chr6:26436910..26439772,3	MCF-7	breast:
38	chr6:26428903..26431040-chr6:26520601..26522647,2	K562	blood:
39	chr11:62609075..62609632-chr6:26457866..26458649,2	NB4	blood:
40	chr6:26155432..26157663-chr6:26427016..26429794,2	K562	blood:
41	chr6:26440449..26443327-chr6:26444566..26448075,3	K562	blood:
42	chr6:26402136..26404045-chr6:26429217..26430789,2	K562	blood:
43	chr6:26457960..26461047-chr6:26519488..26522400,3	MCF-7	breast:
44	chr6:26170156..26172522-chr6:26452443..26454404,2	K562	blood:
45	chr6:26429586..26431412-chr6:26436567..26439801,3	K562	blood:
46	chr6:26194454..26196635-chr6:26433638..26435615,2	K562	blood:

(count:14 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BTN2A1-3	chr6:26440738-26440876	NONHSAT108281
2	lnc-BTN3A3-1	chr6:26439934-26440114	l_3143_chr6:26439933-26448332_testes
3	lnc-HIST1H4H-4	chr6:26439934-26440114	l_3142_chr6:26432914-26440114_testes
4	lnc-BTN2A1-3	chr6:26443610-26444032	NONHSAT108281
5	lnc-HIST1H4H-4	chr6:26437217-26437294	l_3142_chr6:26432914-26440114_testes
6	lnc-BTN3A3-1	chr6:26447901-26448486	l_3143_chr6:26439933-26448332_testes
7	lnc-BTN2A1-2	chr6:26449465-26449916	NONHSAT108282
8	lnc-BTN2A1-2	chr6:26450335-26450442	NONHSAT108282
9	lnc-HIST1H4H-4	chr6:26432915-26433370	l_3142_chr6:26432914-26440114_testes
10	lnc-BTN2A1-3	chr6:26443798-26444167	NONHSAT108280
11	lnc-HIST1H4H-4	chr6:26439052-26439291	l_3142_chr6:26432914-26440114_testes
12	lnc-BTN3A3-1	chr6:26442281-26442343	l_3143_chr6:26439933-26448332_testes
13	lnc-BTN2A1-3	chr6:26443610-26443670	NONHSAT108280
14	lnc-BTN2A1-3	chr6:26440721-26440876	NONHSAT108280

No data

(count:1 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	BTN3A3	hsa-miR-186-5p	chr6:26452722-26452745

Variant related genes	Relation type
BTN2A1	TF binding region
BTN3A3	TF binding region
BTN2A1	CpG island
BTN3A3	CpG island
ENSG00000198518	chromatin interactions
ENSG00000215979	chromatin interactions
ENSG00000158406	chromatin interactions
ENSG00000228223	chromatin interactions
ENSG00000186470	chromatin interactions
ENSG00000199289	chromatin interactions
ENSG00000026950	chromatin interactions
ENSG00000158373	chromatin interactions
ENSG00000124508	chromatin interactions
ENSG00000111801	chromatin interactions
ENSG00000168298	chromatin interactions
ENSG00000124549	chromatin interactions
ENSG00000217275	chromatin interactions
ENSG00000216331	chromatin interactions
ENSG00000133316	chromatin interactions
ENSG00000112763	chromatin interactions

Extended variants
information (count: 1447 )
Associated
traits (count: 103 )

Variant overlapped rSNPs/rCNVs (count:1447 , 50 per page) page: 1 2 3 4 5 6 7 ... 29

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs538820552	chr6:26429275-26429276	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
2	rs144257786	chr6:26429300-26429301	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
3	rs77306124	chr6:26429329-26429330	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
4	rs192305135	chr6:26429383-26429384	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
5	rs554939586	chr6:26429430-26429431	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
6	rs78088711	chr6:26429447-26429448	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
7	rs540720885	chr6:26429507-26429508	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
8	rs560541500	chr6:26429540-26429541	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
9	rs573088429	chr6:26429544-26429545	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
10	rs545210423	chr6:26429565-26429566	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
11	rs7739518	chr6:26429566-26429567	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs530833574	chr6:26429584-26429585	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
13	rs4712994	chr6:26429655-26429656	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
14	rs560949180	chr6:26429665-26429666	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
15	rs529612668	chr6:26429773-26429774	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
16	rs4712995	chr6:26429796-26429797	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
17	rs149769215	chr6:26429823-26429824	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
18	rs538874473	chr6:26429830-26429831	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
19	rs145632329	chr6:26429841-26429842	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
20	rs370994188	chr6:26429882-26429883	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
21	rs141387368	chr6:26429926-26429927	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
22	rs145255905	chr6:26429950-26429951	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
23	rs147605194	chr6:26429984-26429985	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
24	rs554914902	chr6:26430006-26430007	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
25	rs183271545	chr6:26430161-26430162	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
26	rs75650916	chr6:26430174-26430175	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
27	rs17611220	chr6:26430232-26430233	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
28	rs187913911	chr6:26430316-26430317	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
29	rs545273599	chr6:26430421-26430422	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
30	rs565068111	chr6:26430434-26430435	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
31	rs532672767	chr6:26430458-26430459	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
32	rs193144539	chr6:26430492-26430493	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
33	rs185305522	chr6:26430536-26430537	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
34	rs542725307	chr6:26430597-26430598	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
35	rs142151442	chr6:26430614-26430615	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
36	rs10946830	chr6:26430658-26430659	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
37	rs201790338	chr6:26430679-26430680	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
38	rs189706860	chr6:26430698-26430699	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
39	rs2393654	chr6:26430711-26430712	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs370091004	chr6:26430724-26430725	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
41	rs532068762	chr6:26430741-26430742	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
42	rs565900755	chr6:26430742-26430743	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
43	rs201654808	chr6:26430749-26430750	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
44	rs551814976	chr6:26430758-26430759	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
45	rs569434704	chr6:26430765-26430766	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
46	rs34293101	chr6:26430816-26430817	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs143133904	chr6:26430823-26430824	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs398110002	chr6:26430830-26430831	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs2893847	chr6:26430848-26430849	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
50	rs148220123	chr6:26430883-26430884	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:103)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Lung cancer	18438408	CNVD
Multiple myeloma	17550852	CNVD
Ewing''s sarcoma	17952124	CNVD
Gastric cancer	16891809	CNVD
Ovarian cancer	21781307	CNVD
Autism	21448237	CNVD
Cancer	20164919	CNVD
Melanoma	18172304	CNVD
Breast cancer	22844521	CNVD
HIV/AIDS	22844521	CNVD
Ovarian cancer	22844521	CNVD
Prostate cancer	22844521	CNVD
Psoriasis	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21552322	CNVD
Immune disease	21076436	CNVD
Autoimmune disease	19135723	CNVD
Systemic lupus erythematosus	17953491	CNVD
Recurrent Infections	22737222	CNVD
Systemic lupus erythematosus	21904924	CNVD
Ependymoma	19289631	CNVD
Gestational infection	22844521	CNVD
Head circumference	22844521	CNVD
Infertility	22844521	CNVD
Recurrent birth weight diabetes	22844521	CNVD
Obesity	22844521	CNVD
Recurrent pregnancy loss	22844521	CNVD
Intellectual disability	21811512	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Nasopharyngeal cancer	22815911	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	21115979	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17133270	CNVD
Autism	22495311	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Cancer	16790693	CNVD
Breast cancer	22032731	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21785460	CNVD
Retinoblastoma	16790693	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
T-cell lymphomas	19863542	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
small cell lung cancer	20016488	CNVD
Williams-beuren syndrome	16971481	CNVD
Renal cell carcinoma	18765545	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	21569311	CNVD
Breast cancer	21509527	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16397240	CNVD
Metanephric adenoma	20802469	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:2057 , 50 per page) page: 1 2 3 4 5 6 7 ... 42

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26422200-26439800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:26422400-26431000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:26422400-26432000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:26422400-26439400	Weak transcription	Primary T cells from cord blood	blood
5	chr6:26422400-26439400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:26422400-26439600	Weak transcription	Thymus	Thymus
7	chr6:26422600-26430800	Weak transcription	A549	lung
8	chr6:26422600-26431000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:26422600-26431000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:26422600-26431000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr6:26422600-26431200	Weak transcription	Fetal Thymus	thymus
12	chr6:26422600-26431400	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr6:26422600-26432600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:26422600-26432800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:26422600-26434200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr6:26422600-26434400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr6:26422600-26434600	Weak transcription	Primary hematopoietic stem cells	blood
18	chr6:26422600-26439400	Weak transcription	HMEC	breast
19	chr6:26422600-26439600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr6:26422600-26439800	Weak transcription	Primary B cells from cord blood	blood
21	chr6:26422600-26440000	Weak transcription	Psoas Muscle	Psoas
22	chr6:26423000-26431000	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr6:26423000-26431600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr6:26423000-26433200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:26423200-26432600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr6:26423200-26432800	Weak transcription	GM12878-XiMat	blood
27	chr6:26423200-26440000	Weak transcription	Colonic Mucosa	Colon
28	chr6:26423400-26431000	Weak transcription	Rectal Smooth Muscle	rectum
29	chr6:26423400-26431200	Weak transcription	Gastric	stomach
30	chr6:26423400-26431400	Weak transcription	Brain Substantia Nigra	brain
31	chr6:26423600-26439400	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr6:26423600-26440400	Weak transcription	Right Ventricle	heart
33	chr6:26423800-26431000	Weak transcription	NHEK	skin
34	chr6:26423800-26431400	Weak transcription	Pancreas	Pancrea
35	chr6:26423800-26439600	Weak transcription	Colon Smooth Muscle	Colon
36	chr6:26423800-26439800	Weak transcription	Hela-S3	cervix
37	chr6:26424800-26431400	Weak transcription	Right Atrium	heart
38	chr6:26424800-26431600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr6:26424800-26431800	Weak transcription	Aorta	Aorta
40	chr6:26424800-26433400	Weak transcription	Esophagus	oesophagus
41	chr6:26425000-26430400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr6:26425000-26433400	Strong transcription	Fetal Muscle Leg	muscle
43	chr6:26425200-26432600	Strong transcription	Fetal Muscle Trunk	muscle
44	chr6:26425400-26431200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr6:26425400-26431200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr6:26425400-26432400	Strong transcription	HSMM	muscle
47	chr6:26425600-26432400	Strong transcription	Fetal Intestine Large	intestine
48	chr6:26425600-26432600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr6:26425600-26432600	Strong transcription	Fetal Lung	lung
50	chr6:26425600-26433400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

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