Variant report

Variant	nsv1029637
Chromosome Location	chr6:69855697-69916758
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:69587193..69588031-chr6:69865072..69865822,2	MCF-7	breast:
2	chr6:69910768..69912301-chr6:69927077..69929055,2	K562	blood:
3	chr6:69861062..69862637-chr6:69865151..69866778,2	K562	blood:
4	chr6:69861062..69862637-chr6:69865151..69866778,2	K562	blood:
5	chr6:69549740..69550662-chr6:69865141..69865963,2	MCF-7	breast:
6	chr6:69887408..69889888-chr6:69893862..69895368,2	K562	blood:
7	chr6:69859676..69862637-chr6:69865151..69866904,3	K562	blood:
8	chr6:69859676..69862637-chr6:69865151..69866904,3	K562	blood:
9	chr6:69887408..69889888-chr6:69893862..69895368,2	K562	blood:

No data

Extended variants
information (count: 2024 )
Associated
traits (count: 83 )

Variant overlapped rSNPs/rCNVs (count:2024 , 50 per page) page: 1 2 3 4 5 6 7 ... 41

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs314218	chr6:69855697-69855698	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs192641983	chr6:69855717-69855718	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs145368003	chr6:69855859-69855860	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs6929969	chr6:69855866-69855867	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs113502847	chr6:69855915-69855916	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs576203315	chr6:69855917-69855918	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs544731317	chr6:69855952-69855953	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs558215930	chr6:69855962-69855963	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs314217	chr6:69856079-69856080	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs541817047	chr6:69856088-69856089	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs559860535	chr6:69856095-69856096	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs146916156	chr6:69856126-69856127	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs529960955	chr6:69856135-69856136	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs147562077	chr6:69856141-69856142	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs563363164	chr6:69856181-69856182	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs141965565	chr6:69856186-69856187	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs527402621	chr6:69856187-69856188	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs551943758	chr6:69856189-69856190	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs571763647	chr6:69856198-69856199	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs72921210	chr6:69856206-69856207	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs183806118	chr6:69856248-69856249	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs567620230	chr6:69856272-69856273	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs536568376	chr6:69856368-69856369	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs564370541	chr6:69856372-69856373	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs569950791	chr6:69856452-69856453	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs538840105	chr6:69856453-69856454	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs558279087	chr6:69856455-69856456	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs571817068	chr6:69856522-69856523	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs541086363	chr6:69856536-69856537	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs554289845	chr6:69856580-69856581	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs574352473	chr6:69856581-69856582	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs143059911	chr6:69856641-69856642	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs563562830	chr6:69856661-69856662	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs376940449	chr6:69856694-69856695	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs546021865	chr6:69856705-69856706	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs77692935	chr6:69856713-69856714	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs58859660	chr6:69856714-69856715	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs397703506	chr6:69856734-69856735	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs559550090	chr6:69856800-69856801	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs527801927	chr6:69856817-69856818	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs547843797	chr6:69856826-69856827	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs531778100	chr6:69856832-69856833	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs201761606	chr6:69856843-69856844	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs550106548	chr6:69856844-69856845	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs568426118	chr6:69856863-69856864	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs148225212	chr6:69856884-69856885	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs12526595	chr6:69856885-69856886	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs530090502	chr6:69856901-69856902	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs530231190	chr6:69856902-69856903	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs570012401	chr6:69856958-69856959	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:83)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	20164919	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21364760	CNVD
Breast cancer	22522925	CNVD
Multiple myeloma	17550852	CNVD
Pancreatic cancer	17952125	CNVD
Acute lymphoblastic leukemia	21098271	CNVD

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69854800-69856200	ZNF genes & repeats	Fetal Lung	lung
2	chr6:69854800-69856600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
3	chr6:69855000-69856400	ZNF genes & repeats	Brain Angular Gyrus	brain
4	chr6:69855000-69856600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:69855000-69856600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:69855000-69856600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:69855200-69857400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:69855400-69856400	ZNF genes & repeats	Fetal Brain Female	brain
9	chr6:69856200-69859600	Weak transcription	Fetal Lung	lung
10	chr6:69856400-69861600	Weak transcription	Fetal Brain Female	brain
11	chr6:69856400-69874000	Weak transcription	Brain Angular Gyrus	brain
12	chr6:69858200-69860400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:69859600-69860400	Strong transcription	Fetal Lung	lung
14	chr6:69860400-69860800	Strong transcription	Cortex derived primary cultured neurospheres	brain
15	chr6:69860400-69862000	Weak transcription	Fetal Lung	lung
16	chr6:69860800-69876200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr6:69864400-69864600	Enhancers	K562	blood
18	chr6:69865000-69866000	Weak transcription	K562	blood
19	chr6:69866000-69866600	Enhancers	K562	blood
20	chr6:69869600-69872400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:69872400-69873200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:69872600-69875200	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr6:69872800-69873000	Enhancers	Brain Anterior Caudate	brain
24	chr6:69872800-69873600	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr6:69872800-69875400	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr6:69873000-69874000	Weak transcription	Brain Anterior Caudate	brain
27	chr6:69873400-69875200	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr6:69873600-69873800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
29	chr6:69873600-69874600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:69873600-69874800	Enhancers	H1 Cell Line	embryonic stem cell
31	chr6:69873600-69874800	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr6:69873600-69875200	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr6:69873800-69874000	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr6:69873800-69875400	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr6:69874000-69874200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
36	chr6:69874000-69874200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr6:69874000-69874600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr6:69874000-69874600	Enhancers	Brain Angular Gyrus	brain
39	chr6:69874000-69874600	Enhancers	Brain Anterior Caudate	brain
40	chr6:69874000-69874800	Enhancers	H9 Cell Line	embryonic stem cell
41	chr6:69874000-69874800	Enhancers	Right Ventricle	heart
42	chr6:69874200-69874800	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr6:69874200-69877600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr6:69874400-69875000	Enhancers	Brain Substantia Nigra	brain
45	chr6:69874600-69875000	Enhancers	Brain Germinal Matrix	brain
46	chr6:69874600-69875400	Weak transcription	Brain Anterior Caudate	brain
47	chr6:69874600-69876400	Weak transcription	Brain Angular Gyrus	brain
48	chr6:69874800-69875400	Enhancers	Brain Hippocampus Middle	brain
49	chr6:69875000-69876000	Weak transcription	Brain Germinal Matrix	brain
50	chr6:69875000-69876400	Weak transcription	Brain Substantia Nigra	brain

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