Variant report

Variant	rs538840105
Chromosome Location	chr6:69856453-69856454
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2754259	chr6:69825681-69858930	Enhancers Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
3	nsv526130	chr6:69851816-69922327	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1029637	chr6:69855697-69916758	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69854800-69856600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
2	chr6:69855000-69856600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:69855000-69856600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:69855000-69856600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:69855200-69857400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:69856200-69859600	Weak transcription	Fetal Lung	lung
7	chr6:69856400-69861600	Weak transcription	Fetal Brain Female	brain
8	chr6:69856400-69874000	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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