Variant report

Variant	nsv1032465
Chromosome Location	chr9:7182123-7409755
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:28)
LncRNA
region (count:13)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:28 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:7227823..7230431-chr9:7232012..7234490,2	K562	blood:
2	chr9:7193931..7197834-chr9:7198175..7201948,5	K562	blood:
3	chr9:7248541..7250774-chr9:7255536..7257975,2	K562	blood:
4	chr13:72439560..72440061-chr9:7288393..7288893,2	NB4	blood:
5	chr9:7374746..7376747-chr9:7378885..7381827,2	K562	blood:
6	chr6:13710981..13713246-chr9:7352673..7355016,2	MCF-7	breast:
7	chr9:7321841..7323561-chr9:7326191..7328579,2	K562	blood:
8	chr9:7094001..7094660-chr9:7234238..7234769,2	MCF-7	breast:
9	chr9:7382644..7384373-chr9:7388000..7390861,2	K562	blood:
10	chr9:7401751..7402674-chr9:7535710..7536817,3	MCF-7	breast:
11	chr9:7401862..7402674-chr9:7479089..7479897,2	MCF-7	breast:
12	chr9:7168923..7170527-chr9:7184801..7187324,2	MCF-7	breast:
13	chr9:7248541..7250774-chr9:7255536..7257975,2	K562	blood:
14	chr9:7198706..7201324-chr9:7202364..7204125,2	K562	blood:
15	chr9:7233905..7235874-chr9:7236903..7238823,2	K562	blood:
16	chr9:7233905..7235874-chr9:7236903..7238823,2	K562	blood:
17	chr9:7198706..7201324-chr9:7202364..7204125,2	K562	blood:
18	chr9:7052501..7053186-chr9:7233839..7234508,2	MCF-7	breast:
19	chr9:7093984..7094670-chr9:7259334..7260480,4	MCF-7	breast:
20	chr9:7227823..7230431-chr9:7232012..7234490,2	K562	blood:
21	chr9:7052132..7053116-chr9:7186335..7186921,2	K562	blood:
22	chr9:7052694..7053246-chr9:7259513..7260136,3	MCF-7	breast:
23	chr9:7193931..7197834-chr9:7198175..7201948,5	K562	blood:
24	chr9:7374746..7376747-chr9:7378885..7381827,2	K562	blood:
25	chr9:7382644..7384373-chr9:7388000..7390861,2	K562	blood:
26	chr9:7321841..7323561-chr9:7326191..7328579,2	K562	blood:
27	chr1:64982456..64983122-chr9:7222631..7223173,2	MCF-7	breast:
28	chr9:7052698..7053251-chr9:7360197..7360994,2	K562	blood:

(count:13 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KDM4C-4	chr9:7208936-7208961	XLOC_007277
2	lnc-KDM4C-6	chr9:7304600-7304683	XLOC_007278
3	lnc-KDM4C-4	chr9:7209772-7210156	NONHSAT130172
4	lnc-C9orf123-9	chr9:7335933-7336064	l_3732_chr9:7334596-7336064_thyroid
5	lnc-C9orf123-9	chr9:7334597-7335051	l_3732_chr9:7334596-7336064_thyroid
6	lnc-KDM4C-3	chr9:7202734-7202875	XLOC_007276
7	lnc-C9orf123-5	chr9:7345540-7345605	XLOC_007640
8	lnc-KDM4C-6	chr9:7327926-7328132	XLOC_007278
9	lnc-C9orf123-9	chr9:7335540-7335590	l_3732_chr9:7334596-7336064_thyroid
10	lnc-C9orf123-5	chr9:7344597-7345051	XLOC_007640
11	lnc-KDM4C-6	chr9:7343265-7343465	XLOC_007278
12	lnc-KDM4C-4	chr9:7208935-7208961	NONHSAT130172
13	lnc-KDM4C-4	chr9:7209783-7209962	XLOC_007277

No data

Variant related genes	Relation type
ENSG00000010017	chromatin interactions
LASS2	miRNA target sites

Extended variants
information (count: 10123 )
Associated
traits (count: 103 )

Variant overlapped rSNPs/rCNVs (count:10123 , 50 per page) page: 1 2 3 4 5 6 7 ... 203

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs534873462	chr9:7182205-7182206	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs549800910	chr9:7182225-7182226	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs145971900	chr9:7182240-7182241	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs2820924	chr9:7182267-7182268	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs75073247	chr9:7182273-7182274	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs75122329	chr9:7182285-7182286	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs78943754	chr9:7182291-7182292	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs112718404	chr9:7182314-7182315	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs2770733	chr9:7182349-7182350	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs537931182	chr9:7182359-7182360	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs556222940	chr9:7182416-7182417	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs79919790	chr9:7182449-7182450	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs574468768	chr9:7182459-7182460	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs76514425	chr9:7182497-7182498	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs559761949	chr9:7182534-7182535	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs371225676	chr9:7182535-7182536	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs79347684	chr9:7182542-7182543	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs575451480	chr9:7182545-7182546	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs554140656	chr9:7182582-7182583	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs183602197	chr9:7182613-7182614	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs112300013	chr9:7182643-7182644	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs199570996	chr9:7182665-7182666	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs2770734	chr9:7182720-7182721	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs576172574	chr9:7182759-7182760	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs76238909	chr9:7182807-7182808	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs561783953	chr9:7182808-7182809	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs7042014	chr9:7182825-7182826	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs10117886	chr9:7182854-7182855	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs75666597	chr9:7182873-7182874	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs527491096	chr9:7182882-7182883	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs552442630	chr9:7182892-7182893	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs570658035	chr9:7182894-7182895	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs2770735	chr9:7182895-7182896	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs148911962	chr9:7182925-7182926	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs75970650	chr9:7182935-7182936	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs573206511	chr9:7182957-7182958	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs2820923	chr9:7182976-7182977	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs554454487	chr9:7182981-7182982	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs572689204	chr9:7182983-7182984	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs546715476	chr9:7182989-7182990	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs565351557	chr9:7183008-7183009	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs144611384	chr9:7183009-7183010	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs576216034	chr9:7183018-7183019	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs188540488	chr9:7183032-7183033	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs147889536	chr9:7183037-7183038	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs544404229	chr9:7183053-7183054	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs573984103	chr9:7183055-7183056	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs75960123	chr9:7183072-7183073	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs397715899	chr9:7183075-7183076	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs10976099	chr9:7183088-7183089	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:103)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Intracranial aneurysm	16715129	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Disorders of sex development	22290220	CNVD
Glioblastoma multiforme	21080181	CNVD
Sudden cardiac death	19188705	CNVD
Non-small cell lung cancer	21829676	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Non-small cell lung cancer	21952639	CNVD
Disorders of sex development	21048976	CNVD
Neuroblastoma	18923191	CNVD
Intellectual disability	22102821	CNVD
abnormal development	18461090	CNVD
Honadal dysgenesis	21048976	CNVD
Medulloblastoma	21979893	CNVD
Lung cancer	16740712	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Developmental delay	21147756	CNVD
Lung cancer	18438408	CNVD
XY gonadal dysgenesis	20685758	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Myelodysplastic syndrome	21251322	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Myelofibrosis	22110671	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Metastatic melanoma	18483359	CNVD
Glioblastoma	19074898	CNVD
Malignant melanoma	19074898	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Medulloblastoma	16783165	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Cancer	20164920	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Renal cell carcinoma	21215367	CNVD
Chordoma	21215367	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:1145 , 50 per page) page: 1 2 3 4 5 6 7 ... 23

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7148600-7185400	Weak transcription	HMEC	breast
2	chr9:7149600-7185400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr9:7149600-7186200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:7151800-7188600	Weak transcription	Colonic Mucosa	Colon
5	chr9:7162600-7182200	Weak transcription	Small Intestine	intestine
6	chr9:7165800-7183800	Weak transcription	Esophagus	oesophagus
7	chr9:7165800-7185400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr9:7167200-7185600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:7169200-7183000	Strong transcription	Primary T cells from cord blood	blood
10	chr9:7171200-7188200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr9:7171200-7193000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr9:7172000-7182400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr9:7172000-7183800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr9:7172600-7185400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr9:7172800-7185400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr9:7172800-7185400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr9:7172800-7185600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr9:7173000-7185600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr9:7173200-7182400	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr9:7173200-7185200	Weak transcription	NHLF	lung
21	chr9:7173200-7185400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr9:7173400-7185400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr9:7173400-7185800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr9:7173400-7185800	Weak transcription	Brain Anterior Caudate	brain
25	chr9:7173400-7186200	Weak transcription	Brain Hippocampus Middle	brain
26	chr9:7173400-7186400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr9:7175000-7183600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr9:7175000-7191800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr9:7175200-7187800	Weak transcription	Ovary	ovary
30	chr9:7176200-7183800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr9:7176200-7185400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr9:7176200-7185400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr9:7176400-7183000	Weak transcription	Thymus	Thymus
34	chr9:7176400-7184400	Weak transcription	Duodenum Mucosa	Duodenum
35	chr9:7176400-7185000	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr9:7176400-7185600	Weak transcription	Spleen	Spleen
37	chr9:7176400-7185800	Weak transcription	Left Ventricle	heart
38	chr9:7176400-7186000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr9:7176400-7186000	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr9:7176400-7186200	Weak transcription	Adipose Nuclei	Adipose
41	chr9:7176400-7186200	Weak transcription	Pancreas	Pancrea
42	chr9:7176400-7186600	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr9:7176400-7188000	Weak transcription	Gastric	stomach
44	chr9:7176600-7182800	Weak transcription	Fetal Intestine Small	intestine
45	chr9:7176600-7183400	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr9:7176600-7184800	Weak transcription	Fetal Intestine Large	intestine
47	chr9:7176600-7185600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr9:7176800-7184800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr9:7176800-7187000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr9:7177000-7185600	Weak transcription	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links