Variant report

Variant	rs10117886
Chromosome Location	chr9:7182854-7182855
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10976093	0.84[AFR][1000 genomes]
rs12006038	1.00[EUR][1000 genomes]
rs2494243	1.00[AMR][1000 genomes]
rs2770723	1.00[AMR][1000 genomes]
rs56722787	1.00[EUR][1000 genomes]
rs57818601	1.00[EUR][1000 genomes]
rs57947810	1.00[EUR][1000 genomes]
rs58007053	1.00[EUR][1000 genomes]
rs58150847	1.00[EUR][1000 genomes]
rs59153482	1.00[EUR][1000 genomes]
rs60648481	1.00[EUR][1000 genomes]
rs61034568	1.00[EUR][1000 genomes]
rs61081634	1.00[EUR][1000 genomes]
rs61147945	1.00[EUR][1000 genomes]
rs61485848	1.00[EUR][1000 genomes]
rs7025784	1.00[EUR][1000 genomes]
rs7031978	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73639883	1.00[EUR][1000 genomes]
rs7850737	1.00[EUR][1000 genomes]
rs7864566	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892166	chr9:6602821-7222495	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1023906	chr9:6731786-7372132	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv613259	chr9:7032776-7541338	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1015874	chr9:7048807-7434890	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv539971	chr9:7048807-7434890	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv892190	chr9:7094860-7186074	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv892192	chr9:7153009-7257340	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
8	esv2758178	chr9:7175387-7482982	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv2759662	chr9:7175387-7482982	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1032465	chr9:7182123-7409755	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv539972	chr9:7182123-7409755	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7148600-7185400	Weak transcription	HMEC	breast
2	chr9:7149600-7185400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr9:7149600-7186200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:7151800-7188600	Weak transcription	Colonic Mucosa	Colon
5	chr9:7165800-7183800	Weak transcription	Esophagus	oesophagus
6	chr9:7165800-7185400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr9:7167200-7185600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr9:7169200-7183000	Strong transcription	Primary T cells from cord blood	blood
9	chr9:7171200-7188200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:7171200-7193000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr9:7172000-7183800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr9:7172600-7185400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr9:7172800-7185400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr9:7172800-7185400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr9:7172800-7185600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr9:7173000-7185600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr9:7173200-7185200	Weak transcription	NHLF	lung
18	chr9:7173200-7185400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr9:7173400-7185400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr9:7173400-7185800	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr9:7173400-7185800	Weak transcription	Brain Anterior Caudate	brain
22	chr9:7173400-7186200	Weak transcription	Brain Hippocampus Middle	brain
23	chr9:7173400-7186400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr9:7175000-7183600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr9:7175000-7191800	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr9:7175200-7187800	Weak transcription	Ovary	ovary
27	chr9:7176200-7183800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr9:7176200-7185400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:7176200-7185400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr9:7176400-7183000	Weak transcription	Thymus	Thymus
31	chr9:7176400-7184400	Weak transcription	Duodenum Mucosa	Duodenum
32	chr9:7176400-7185000	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr9:7176400-7185600	Weak transcription	Spleen	Spleen
34	chr9:7176400-7185800	Weak transcription	Left Ventricle	heart
35	chr9:7176400-7186000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr9:7176400-7186000	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr9:7176400-7186200	Weak transcription	Adipose Nuclei	Adipose
38	chr9:7176400-7186200	Weak transcription	Pancreas	Pancrea
39	chr9:7176400-7186600	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr9:7176400-7188000	Weak transcription	Gastric	stomach
41	chr9:7176600-7183400	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr9:7176600-7184800	Weak transcription	Fetal Intestine Large	intestine
43	chr9:7176600-7185600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr9:7176800-7184800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr9:7176800-7187000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr9:7177000-7185600	Weak transcription	Rectal Smooth Muscle	rectum
47	chr9:7177200-7183000	Weak transcription	Osteobl	bone
48	chr9:7177200-7186000	Weak transcription	Fetal Stomach	stomach
49	chr9:7177400-7186000	Weak transcription	Liver	Liver
50	chr9:7177800-7185400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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