Variant report

Variant	nsv892192
Chromosome Location	chr9:7153009-7257340
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:25)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:2)

No data

(count:25 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:7193931..7197834-chr9:7198175..7201948,5	K562	blood:
2	chr9:7131849..7134386-chr9:7150388..7153232,2	K562	blood:
3	chr9:7169706..7171250-chr9:7171522..7173272,2	K562	blood:
4	chr9:7169706..7171250-chr9:7171522..7173272,2	K562	blood:
5	chr9:7248541..7250774-chr9:7255536..7257975,2	K562	blood:
6	chr9:7168923..7170527-chr9:7184801..7187324,2	MCF-7	breast:
7	chr9:7233905..7235874-chr9:7236903..7238823,2	K562	blood:
8	chr1:64982456..64983122-chr9:7222631..7223173,2	MCF-7	breast:
9	chr9:7149048..7151328-chr9:7152979..7155533,2	K562	blood:
10	chr9:7163757..7166355-chr9:7173278..7174995,2	MCF-7	breast:
11	chr9:7052132..7053116-chr9:7186335..7186921,2	K562	blood:
12	chr9:7227823..7230431-chr9:7232012..7234490,2	K562	blood:
13	chr9:7198706..7201324-chr9:7202364..7204125,2	K562	blood:
14	chr9:7094001..7094660-chr9:7234238..7234769,2	MCF-7	breast:
15	chr9:7148888..7150780-chr9:7164097..7166257,2	K562	blood:
16	chr9:7233905..7235874-chr9:7236903..7238823,2	K562	blood:
17	chr9:7168923..7170527-chr9:7184801..7187324,2	MCF-7	breast:
18	chr9:7198706..7201324-chr9:7202364..7204125,2	K562	blood:
19	chr9:7193931..7197834-chr9:7198175..7201948,5	K562	blood:
20	chr9:7166311..7168822-chr9:7171544..7173706,2	K562	blood:
21	chr9:7052501..7053186-chr9:7233839..7234508,2	MCF-7	breast:
22	chr9:7227823..7230431-chr9:7232012..7234490,2	K562	blood:
23	chr9:7166311..7168822-chr9:7171544..7173706,2	K562	blood:
24	chr9:7248541..7250774-chr9:7255536..7257975,2	K562	blood:
25	chr9:7163757..7166355-chr9:7173278..7174995,2	MCF-7	breast:

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KDM4C-3	chr9:7177450-7178166	XLOC_007276
2	lnc-KDM4C-4	chr9:7208935-7208961	NONHSAT130172
3	lnc-KDM4C-3	chr9:7178524-7178549	XLOC_007276
4	lnc-KDM4C-3	chr9:7202734-7202875	XLOC_007276
5	lnc-KDM4C-4	chr9:7208936-7208961	XLOC_007277
6	lnc-KDM4C-3	chr9:7177838-7178166	XLOC_007276
7	lnc-KDM4C-4	chr9:7209772-7210156	NONHSAT130172
8	lnc-KDM4C-4	chr9:7209783-7209962	XLOC_007277

No data

(count:2 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	KDM4C	hsa-miR-335-5p	chr9:7175359-7175381
2	KDM4C	hsa-miR-335-5p	chr9:7175374-7175381

Variant related genes	Relation type
LASS2	miRNA target sites

Extended variants
information (count: 4481 )
Associated
traits (count: 106 )

Variant overlapped rSNPs/rCNVs (count:4481 , 50 per page) page: 1 2 3 4 5 6 7 ... 90

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11789237	chr9:7153009-7153010	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs541011820	chr9:7153012-7153013	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs560044019	chr9:7153014-7153015	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs527552904	chr9:7153028-7153029	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs183974835	chr9:7153042-7153043	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs545608714	chr9:7153048-7153049	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs188702500	chr9:7153066-7153067	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs191280904	chr9:7153135-7153136	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs549895750	chr9:7153148-7153149	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs561618805	chr9:7153180-7153181	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs528934805	chr9:7153184-7153185	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs140602479	chr9:7153191-7153192	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs566399578	chr9:7153193-7153194	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs184425793	chr9:7153214-7153215	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs552005051	chr9:7153218-7153219	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs62532924	chr9:7153219-7153220	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs562361487	chr9:7153223-7153224	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs570274855	chr9:7153252-7153253	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs537235752	chr9:7153273-7153274	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs144465899	chr9:7153303-7153304	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs73398961	chr9:7153335-7153336	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs534717565	chr9:7153345-7153346	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs552914550	chr9:7153347-7153348	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs73398963	chr9:7153365-7153366	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs557458730	chr9:7153375-7153376	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs377381929	chr9:7153391-7153392	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs7872887	chr9:7153428-7153429	Weak transcription Enhancers Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs61368828	chr9:7153441-7153442	Weak transcription Enhancers Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs569744900	chr9:7153457-7153458	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs568144973	chr9:7153477-7153478	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs190544739	chr9:7153488-7153489	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs10976071	chr9:7153489-7153490	Weak transcription Enhancers Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs182247919	chr9:7153539-7153540	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs147852268	chr9:7153541-7153542	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs142322871	chr9:7153571-7153572	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs555920623	chr9:7153573-7153574	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs532952175	chr9:7153576-7153577	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs570414494	chr9:7153597-7153598	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs552088699	chr9:7153623-7153624	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs185245203	chr9:7153646-7153647	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs73398971	chr9:7153707-7153708	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs149777065	chr9:7153710-7153711	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs567435306	chr9:7153766-7153767	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs371897839	chr9:7153798-7153799	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs577255496	chr9:7153813-7153814	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs145838413	chr9:7153837-7153838	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs145749676	chr9:7153845-7153846	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs544847565	chr9:7153893-7153894	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs555500494	chr9:7153942-7153943	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs114043901	chr9:7153962-7153963	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:106)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Intracranial aneurysm	16715129	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Disorders of sex development	22290220	CNVD
Glioblastoma multiforme	21080181	CNVD
Sudden cardiac death	19188705	CNVD
Non-small cell lung cancer	21829676	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Non-small cell lung cancer	21952639	CNVD
Disorders of sex development	21048976	CNVD
Neuroblastoma	18923191	CNVD
Intellectual disability	22102821	CNVD
abnormal development	18461090	CNVD
Honadal dysgenesis	21048976	CNVD
Medulloblastoma	21979893	CNVD
Lung cancer	16740712	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Developmental delay	21147756	CNVD
Lung cancer	18438408	CNVD
XY gonadal dysgenesis	20685758	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Myelodysplastic syndrome	21251322	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Myelofibrosis	22110671	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Metastatic melanoma	18483359	CNVD
Glioblastoma	19074898	CNVD
Malignant melanoma	19074898	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Cancer	20164920	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Renal cell carcinoma	21215367	CNVD

Chromatin state (count:1110 , 50 per page) page: 1 2 3 4 5 6 7 ... 23

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7104800-7153200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:7128000-7153200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr9:7130200-7154800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:7135200-7164800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:7136600-7153200	Weak transcription	HepG2	liver
6	chr9:7147200-7171000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr9:7147400-7165600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr9:7147400-7174600	Weak transcription	NHEK	skin
9	chr9:7147600-7153800	Weak transcription	Brain Germinal Matrix	brain
10	chr9:7147600-7155200	Enhancers	Fetal Heart	heart
11	chr9:7147800-7165200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr9:7148400-7153400	Weak transcription	Aorta	Aorta
13	chr9:7148400-7153400	Weak transcription	Brain Anterior Caudate	brain
14	chr9:7148600-7153200	Weak transcription	Pancreas	Pancrea
15	chr9:7148600-7161000	Weak transcription	Ovary	ovary
16	chr9:7148600-7172200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr9:7148600-7185400	Weak transcription	HMEC	breast
18	chr9:7148800-7153200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr9:7148800-7153200	Weak transcription	Brain Substantia Nigra	brain
20	chr9:7148800-7153800	Weak transcription	Dnd41	blood
21	chr9:7148800-7154600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr9:7148800-7164800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr9:7149000-7153600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr9:7149000-7165000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr9:7149000-7165200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr9:7149200-7164800	Weak transcription	Liver	Liver
27	chr9:7149200-7165200	Weak transcription	Thymus	Thymus
28	chr9:7149400-7153200	Weak transcription	Right Atrium	heart
29	chr9:7149400-7153800	Weak transcription	Fetal Intestine Large	intestine
30	chr9:7149400-7164600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr9:7149400-7165200	Weak transcription	Adipose Nuclei	Adipose
32	chr9:7149600-7172200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr9:7149600-7185400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr9:7149600-7186200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr9:7149800-7153400	Weak transcription	Duodenum Mucosa	Duodenum
36	chr9:7149800-7153400	Weak transcription	Gastric	stomach
37	chr9:7149800-7153800	Weak transcription	Brain Cingulate Gyrus	brain
38	chr9:7149800-7172800	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr9:7150200-7153600	Weak transcription	Brain Hippocampus Middle	brain
40	chr9:7150400-7175800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr9:7150600-7165200	Weak transcription	GM12878-XiMat	blood
42	chr9:7150800-7153200	Weak transcription	Primary B cells from cord blood	blood
43	chr9:7150800-7153200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr9:7150800-7153200	Weak transcription	K562	blood
45	chr9:7150800-7153400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr9:7150800-7164600	Weak transcription	Fetal Thymus	thymus
47	chr9:7150800-7164800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr9:7150800-7165000	Weak transcription	Esophagus	oesophagus
49	chr9:7150800-7165200	Weak transcription	Spleen	Spleen
50	chr9:7150800-7165400	Weak transcription	Primary neutrophils fromperipheralblood	blood

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