Variant report

Variant	rs61368828
Chromosome Location	chr9:7153441-7153442
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:7149048..7151328-chr9:7152979..7155533,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10115707	0.81[EUR][1000 genomes]
rs10121668	0.88[EUR][1000 genomes]
rs12349798	0.81[EUR][1000 genomes]
rs16925503	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16925516	0.88[EUR][1000 genomes]
rs7861453	0.88[EUR][1000 genomes]
rs913583	0.88[EUR][1000 genomes]
rs932882	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892166	chr9:6602821-7222495	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1023906	chr9:6731786-7372132	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv613259	chr9:7032776-7541338	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1015874	chr9:7048807-7434890	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv539971	chr9:7048807-7434890	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv892190	chr9:7094860-7186074	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv892191	chr9:7150997-7173752	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv892192	chr9:7153009-7257340	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7130200-7154800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:7135200-7164800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:7147200-7171000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr9:7147400-7165600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:7147400-7174600	Weak transcription	NHEK	skin
6	chr9:7147600-7153800	Weak transcription	Brain Germinal Matrix	brain
7	chr9:7147600-7155200	Enhancers	Fetal Heart	heart
8	chr9:7147800-7165200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr9:7148600-7161000	Weak transcription	Ovary	ovary
10	chr9:7148600-7172200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr9:7148600-7185400	Weak transcription	HMEC	breast
12	chr9:7148800-7153800	Weak transcription	Dnd41	blood
13	chr9:7148800-7154600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:7148800-7164800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:7149000-7153600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr9:7149000-7165000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:7149000-7165200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr9:7149200-7164800	Weak transcription	Liver	Liver
19	chr9:7149200-7165200	Weak transcription	Thymus	Thymus
20	chr9:7149400-7153800	Weak transcription	Fetal Intestine Large	intestine
21	chr9:7149400-7164600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr9:7149400-7165200	Weak transcription	Adipose Nuclei	Adipose
23	chr9:7149600-7172200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr9:7149600-7185400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr9:7149600-7186200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr9:7149800-7153800	Weak transcription	Brain Cingulate Gyrus	brain
27	chr9:7149800-7172800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr9:7150200-7153600	Weak transcription	Brain Hippocampus Middle	brain
29	chr9:7150400-7175800	Weak transcription	Rectal Smooth Muscle	rectum
30	chr9:7150600-7165200	Weak transcription	GM12878-XiMat	blood
31	chr9:7150800-7164600	Weak transcription	Fetal Thymus	thymus
32	chr9:7150800-7164800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr9:7150800-7165000	Weak transcription	Esophagus	oesophagus
34	chr9:7150800-7165200	Weak transcription	Spleen	Spleen
35	chr9:7150800-7165400	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr9:7150800-7169400	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr9:7150800-7172800	Weak transcription	Fetal Muscle Leg	muscle
38	chr9:7151000-7159800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr9:7151200-7153800	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr9:7151200-7164400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr9:7151200-7165000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr9:7151200-7171000	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr9:7151200-7173000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr9:7151400-7153600	Weak transcription	Primary T cells from cord blood	blood
45	chr9:7151400-7153600	Weak transcription	Stomach Mucosa	stomach
46	chr9:7151400-7165000	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr9:7151400-7165000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr9:7151400-7165000	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr9:7151600-7162600	Weak transcription	Primary hematopoietic stem cells	blood
50	chr9:7151600-7163800	Weak transcription	Primary T helper cells fromperipheralblood	blood

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