Variant report

Variant	nsv1032637
Chromosome Location	chr7:38832627-38902723
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr7:38836541-38836865	HepG2	liver:	n/a	n/a
2	ARID3A	chr7:38846592-38846782	K562	blood:	n/a	n/a
3	ARID3A	chr7:38895194-38895249	K562	blood:	n/a	n/a
4	ARID3A	chr7:38836538-38836920	K562	blood:	n/a	n/a
5	ATF1	chr7:38846594-38847146	K562	blood:	n/a	n/a
6	ATF1	chr7:38895500-38895843	K562	blood:	n/a	n/a
7	ATF1	chr7:38885836-38886202	K562	blood:	n/a	n/a
8	ATF3	chr7:38885776-38886217	K562	blood:	n/a	n/a
9	ATF3	chr7:38846485-38846894	K562	blood:	n/a	n/a
10	BACH1	chr7:38862141-38862505	K562	blood:	n/a	n/a
11	BACH1	chr7:38862157-38862459	H1-hESC	embryonic stem cell:	n/a	n/a
12	BHLHE40	chr7:38898181-38898394	K562	blood:	n/a	n/a
13	BHLHE40	chr7:38836544-38836732	K562	blood:	n/a	n/a
14	CCNT2	chr7:38883382-38883631	K562	blood:	n/a	n/a
15	CCNT2	chr7:38846598-38846876	K562	blood:	n/a	n/a
16	CEBPB	chr7:38845906-38846035	K562	blood:	n/a	n/a
17	CEBPB	chr7:38885905-38886280	IMR90	lung:	n/a	n/a
18	CEBPB	chr7:38880681-38881372	IMR90	lung:	n/a	n/a
19	CEBPB	chr7:38885952-38886170	K562	blood:	n/a	n/a
20	CEBPB	chr7:38881268-38881279	K562	blood:	n/a	n/a
21	CEBPB	chr7:38836611-38836888	H1-hESC	embryonic stem cell:	n/a	n/a
22	CEBPB	chr7:38862343-38862692	K562	blood:	n/a	chr7:38862522-38862530
23	CEBPD	chr7:38846528-38846938	K562	blood:	n/a	n/a
24	CHD1	chr7:38836735-38836935	H1-hESC	embryonic stem cell:	n/a	n/a
25	CTCF	chr7:38868371-38868484	K562	blood:	n/a	chr7:38868426-38868444 chr7:38868428-38868449
26	CTCF	chr7:38868400-38868550	BJ	skin:	n/a	chr7:38868426-38868444 chr7:38868428-38868449
27	CTCF	chr7:38836458-38836484	Lung_OC	lung:	n/a	n/a
28	CTCF	chr7:38836620-38836770	AoAF	blood vessel:	n/a	chr7:38836698-38836716 chr7:38836701-38836714 chr7:38836699-38836715 chr7:38836700-38836721
29	CTCF	chr7:38836220-38836370	NB4	blood:	n/a	n/a
30	CTCF	chr7:38836600-38836750	AoAF	blood vessel:	n/a	chr7:38836698-38836716 chr7:38836701-38836714 chr7:38836699-38836715 chr7:38836700-38836721
31	CTCF	chr7:38836620-38836770	HBMEC	blood vessel:	n/a	chr7:38836698-38836716 chr7:38836701-38836714 chr7:38836699-38836715 chr7:38836700-38836721
32	CTCF	chr7:38836620-38836770	AG04449	skin:	n/a	chr7:38836698-38836716 chr7:38836701-38836714 chr7:38836699-38836715 chr7:38836700-38836721
33	CTCF	chr7:38836552-38836778	SK-N-SH_RA	brain:	n/a	chr7:38836698-38836716 chr7:38836701-38836714 chr7:38836699-38836715 chr7:38836700-38836721
34	CTCF	chr7:38836580-38836730	AG04450	lung:	n/a	chr7:38836698-38836716 chr7:38836701-38836714 chr7:38836699-38836715 chr7:38836700-38836721
35	CTCF	chr7:38868394-38868463	HepG2	liver:	n/a	chr7:38868426-38868444 chr7:38868428-38868449
36	CTCF	chr7:38836525-38836900	K562	blood:	n/a	chr7:38836698-38836716 chr7:38836701-38836714 chr7:38836699-38836715 chr7:38836700-38836721
37	CTCF	chr7:38836560-38836710	HA-sp	spinal cord:	n/a	n/a
38	CTCF	chr7:38836546-38836915	A549	lung:	n/a	chr7:38836698-38836716 chr7:38836701-38836714 chr7:38836699-38836715 chr7:38836700-38836721
39	CTCF	chr7:38868400-38868449	GM13977	blood:	n/a	chr7:38868426-38868444 chr7:38868428-38868449
40	CTCF	chr7:38836240-38836390	NHDF-neo	bronchial:	n/a	n/a
41	CTCF	chr7:38836620-38836770	HCM	heart:	n/a	chr7:38836698-38836716 chr7:38836701-38836714 chr7:38836699-38836715 chr7:38836700-38836721
42	CTCF	chr7:38836580-38836730	GM12871	blood:	n/a	chr7:38836698-38836716 chr7:38836701-38836714 chr7:38836699-38836715 chr7:38836700-38836721
43	CTCF	chr7:38836581-38836809	MCF-7	breast:	n/a	chr7:38836698-38836716 chr7:38836701-38836714 chr7:38836699-38836715 chr7:38836700-38836721
44	CTCF	chr7:38835960-38836110	AG10803	skin:	n/a	n/a
45	CTCF	chr7:38836660-38836810	AG04450	lung:	n/a	chr7:38836698-38836716 chr7:38836701-38836714 chr7:38836699-38836715 chr7:38836700-38836721
46	CTCF	chr7:38836700-38836850	GM12865	blood:	n/a	chr7:38836701-38836714 chr7:38836700-38836721
47	CTCF	chr7:38836560-38836710	GM12872	blood:	n/a	n/a
48	CTCF	chr7:38868420-38868570	AG04450	lung:	n/a	chr7:38868426-38868444 chr7:38868428-38868449
49	CTCF	chr7:38836540-38836690	NHEK	skin:	n/a	n/a
50	CTCF	chr7:38836600-38836750	GM12869	blood:	n/a	chr7:38836698-38836716 chr7:38836701-38836714 chr7:38836699-38836715 chr7:38836700-38836721

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:38886074-38886124	Hela-S3	cervix:	n/a
2	chr7:38880852-38880902	IMR90	lung:	fetal
3	chr7:38886074-38886124	SAEC	small airway:	n/a
4	chr7:38886074-38886124	Hepatocyte	liver:	n/a
5	chr7:38886074-38886124	HEEpiC	esophagus:	n/a
6	chr7:38880852-38880902	BJ	skin:	n/a
7	chr7:38886074-38886124	SK-N-SH	brain:	n/a
8	chr7:38880852-38880902	HCPEpiC	choroid plexus:	n/a
9	chr7:38886074-38886124	HAEpiC	amniotic membrane:	n/a
10	chr7:38880852-38880902	HRPEpiC	eye:	n/a
11	chr7:38880852-38880902	ProgFib	skin:	n/a
12	chr7:38880852-38880902	GM12878	blood:	n/a
13	chr7:38880852-38880902	PrEC	prostate:	n/a
14	chr7:38880852-38880902	NB4	blood:	n/a
15	chr7:38886074-38886124	HCF	heart:	n/a
16	chr7:38880852-38880902	AG10803	skin:	n/a
17	chr7:38880852-38880902	BE2_C	brain:	n/a
18	chr7:38880852-38880902	PANC-1	pancreas:	n/a
19	chr7:38886074-38886124	HIPEpiC	eye:	n/a
20	chr7:38880852-38880902	HMEC	breast:	n/a
21	chr7:38886074-38886124	A549	lung:	n/a
22	chr7:38880852-38880902	GM19239	blood:	n/a
23	chr7:38886074-38886124	PrEC	prostate:	n/a
24	chr7:38880852-38880902	HCF	heart:	n/a
25	chr7:38886074-38886124	SK-N-SH_RA	brain:	n/a
26	chr7:38880852-38880902	SK-N-SH	brain:	n/a
27	chr7:38886074-38886124	NT2-D1	testis:	n/a
28	chr7:38886074-38886124	GM12878	blood:	n/a
29	chr7:38886074-38886124	AG04450	lung:	fetal
30	chr7:38886074-38886124	ProgFib	skin:	n/a
31	chr7:38880852-38880902	HAEpiC	amniotic membrane:	n/a
32	chr7:38886074-38886124	BE2_C	brain:	n/a
33	chr7:38880852-38880902	HNPCEpiC	eye:	n/a
34	chr7:38880852-38880902	MCF-7	breast:	n/a
35	chr7:38880852-38880902	ECC-1	luminal epithelium:	n/a
36	chr7:38886074-38886124	GM06990	blood:	n/a
37	chr7:38880852-38880902	HEEpiC	esophagus:	n/a
38	chr7:38880852-38880902	AG09309	skin:	n/a
39	chr7:38886074-38886124	GM12892	blood:	n/a
40	chr7:38880852-38880902	HCT-116	colon:	n/a
41	chr7:38880852-38880902	HCM	heart:	n/a
42	chr7:38886074-38886124	Caco-2	colon:	n/a
43	chr7:38886074-38886124	NB4	blood:	n/a
44	chr7:38886074-38886124	HCT-116	colon:	n/a
45	chr7:38886074-38886124	GM12891	blood:	n/a
46	chr7:38880852-38880902	LNCaP	prostate:	n/a
47	chr7:38880852-38880902	AG04450	lung:	fetal
48	chr7:38886074-38886124	HUVEC	blood vessel:	n/a
49	chr7:38886074-38886124	SK-N-MC	brain:	n/a
50	chr7:38880852-38880902	MCF10A-Er-Src	breast:	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:38857572..38859924-chr7:38860336..38863164,2	MCF-7	breast:
2	chr7:38880902..38883461-chr7:38886381..38888372,2	K562	blood:
3	chr7:38900726..38902861-chr7:38904557..38906481,2	MCF-7	breast:
4	chr7:38875566..38877442-chr7:38880848..38883339,2	MCF-7	breast:
5	chr7:38873915..38876598-chr7:38884159..38886331,2	MCF-7	breast:
6	chr7:38857572..38859924-chr7:38860336..38863164,2	MCF-7	breast:
7	chr7:38882709..38885356-chr7:38890864..38893223,2	K562	blood:
8	chr7:38885810..38887445-chr7:38893961..38896931,2	MCF-7	breast:
9	chr7:38900320..38904154-chr7:38910727..38914259,3	K562	blood:
10	chr7:38836355..38837155-chr7:39503792..39504917,3	MCF-7	breast:
11	chr7:38873668..38876068-chr7:38880511..38882054,2	K562	blood:
12	chr7:38875566..38877442-chr7:38880848..38883339,2	MCF-7	breast:
13	chr7:38884593..38886823-chr7:38890906..38893182,2	MCF-7	breast:
14	chr7:38893039..38894682-chr7:38896335..38898447,2	K562	blood:
15	chr7:38887343..38889713-chr7:38889792..38892384,2	MCF-7	breast:
16	chr7:38887343..38889713-chr7:38889792..38892384,2	MCF-7	breast:
17	chr7:38882709..38885356-chr7:38890864..38893223,2	K562	blood:
18	chr7:38889563..38891670-chr7:38895298..38897406,2	K562	blood:
19	chr7:38888643..38891197-chr7:38936286..38938382,2	MCF-7	breast:
20	chr7:38893413..38896014-chr7:38948618..38950136,2	K562	blood:
21	chr7:38862474..38864666-chr7:38869704..38871637,2	K562	blood:
22	chr7:38884593..38886823-chr7:38890906..38893182,2	MCF-7	breast:
23	chr7:38873915..38876598-chr7:38884159..38886331,2	MCF-7	breast:
24	chr7:38836202..38837177-chr7:39504337..39505154,4	K562	blood:
25	chr7:38873668..38876068-chr7:38880511..38882054,2	K562	blood:
26	chr7:38889563..38891670-chr7:38895298..38897406,2	K562	blood:
27	chr7:38880902..38883461-chr7:38886381..38888372,2	K562	blood:
28	chr7:38902352..38905123-chr7:38929723..38931780,2	MCF-7	breast:
29	chr7:38885810..38887445-chr7:38893961..38896931,2	MCF-7	breast:
30	chr7:38893039..38894682-chr7:38896335..38898447,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM183B-4	chr7:38829644-38833785	NONHSAT120193

Variant related genes	Relation type
VPS41	TF binding region
VPS41	CpG island
ENSG00000006715	chromatin interactions
ENSG00000106536	chromatin interactions

Extended variants
information (count: 2354 )
Associated
traits (count: 82 )

Variant overlapped rSNPs/rCNVs (count:2354 , 50 per page) page: 1 2 3 4 5 6 7 ... 48

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs545180074	chr7:38832691-38832692	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
2	rs543148805	chr7:38832750-38832751	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
3	rs146685924	chr7:38832795-38832796	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs370893034	chr7:38832814-38832815	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs115907694	chr7:38832826-38832827	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs377613140	chr7:38832829-38832830	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs140294549	chr7:38832858-38832859	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
8	rs577023736	chr7:38832864-38832865	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs531135766	chr7:38832874-38832875	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs544572364	chr7:38832909-38832910	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs375811992	chr7:38832982-38832983	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs192325539	chr7:38832989-38832990	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs530238015	chr7:38832990-38832991	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
14	rs183236397	chr7:38833010-38833011	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs557494200	chr7:38833018-38833019	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
16	rs375116467	chr7:38833138-38833139	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
17	rs532209705	chr7:38833213-38833214	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
18	rs572719797	chr7:38833252-38833253	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
19	rs143955723	chr7:38833281-38833282	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
20	rs568849848	chr7:38833289-38833290	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
21	rs540111756	chr7:38833342-38833343	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
22	rs554559448	chr7:38833408-38833409	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
23	rs568304868	chr7:38833427-38833428	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
24	rs77099546	chr7:38833469-38833470	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
25	rs553906607	chr7:38833471-38833472	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
26	rs573019347	chr7:38833502-38833503	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
27	rs545084845	chr7:38833526-38833527	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
28	rs558572505	chr7:38833553-38833554	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
29	rs561678121	chr7:38833567-38833568	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
30	rs76219461	chr7:38833589-38833590	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
31	rs61246172	chr7:38833603-38833604	Weak transcription Strong transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs187270735	chr7:38833650-38833651	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
33	rs530390415	chr7:38833675-38833676	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
34	rs540486056	chr7:38833731-38833732	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
35	rs544150617	chr7:38833753-38833754	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
36	rs562355123	chr7:38833824-38833825	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs192149342	chr7:38833835-38833836	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs560652235	chr7:38833861-38833862	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs532273203	chr7:38833867-38833868	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs552299031	chr7:38833887-38833888	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs368248269	chr7:38833928-38833929	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs531218020	chr7:38833931-38833932	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs370145299	chr7:38833938-38833939	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs184453454	chr7:38833956-38833957	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs77489158	chr7:38833976-38833977	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs534061091	chr7:38833991-38833992	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs547313572	chr7:38834012-38834013	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs550924253	chr7:38834032-38834033	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs146438739	chr7:38834034-38834035	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs538787059	chr7:38834036-38834037	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:82)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Lung cancer	18438408	CNVD
lymphocytic leukemia	21291569	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Cancer	21637783	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16397240	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Glioblastoma multiforme	18628472	CNVD
Cancer	21183584	CNVD
Breast cancer	21785460	CNVD
Follicular lymphoma	20505157	CNVD
Williams-beuren syndrome	22470819	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21364760	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	21251322	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Hepatocellular carcinoma	16750200	CNVD
Prostate cancer	18632612	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Acute myeloid leukemia	17237825	CNVD
Breast cancer	17899364	CNVD
Breast cancer	20409316	CNVD
Acute monocytic leukemia	16498392	CNVD
Myelofibrosis	22110671	CNVD
Colorectal cancer	21645411	CNVD
Colorectal cancer	19455253	CNVD
Glioblastoma multiforme	22286061	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Sezary syndrome	18413736	CNVD
Gastric cancer	24379144	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:1231 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38757200-38835400	Weak transcription	Psoas Muscle	Psoas
2	chr7:38784800-38835000	Weak transcription	NHEK	skin
3	chr7:38785600-38834600	Weak transcription	HMEC	breast
4	chr7:38785600-38835000	Weak transcription	NH-A	brain
5	chr7:38793400-38861200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:38800200-38837600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr7:38803200-38845400	Weak transcription	Colonic Mucosa	Colon
8	chr7:38803200-38846000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr7:38804400-38836200	Weak transcription	Fetal Brain Male	brain
10	chr7:38806800-38832800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr7:38812800-38834800	Weak transcription	HSMMtube	muscle
12	chr7:38813800-38834200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr7:38813800-38836400	Weak transcription	HUVEC	blood vessel
14	chr7:38813800-38839600	Weak transcription	Right Ventricle	heart
15	chr7:38813800-38857400	Weak transcription	HSMM	muscle
16	chr7:38818400-38833000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr7:38820000-38836600	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr7:38822200-38837400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr7:38822400-38836400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr7:38822400-38855200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:38823600-38835400	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr7:38824800-38836400	Strong transcription	Primary B cells from cord blood	blood
23	chr7:38825000-38837800	Weak transcription	Fetal Heart	heart
24	chr7:38825200-38836400	Strong transcription	Primary B cells from peripheral blood	blood
25	chr7:38825600-38834600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr7:38825600-38835800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr7:38825600-38835800	Strong transcription	GM12878-XiMat	blood
28	chr7:38825800-38835600	Strong transcription	Adipose Nuclei	Adipose
29	chr7:38825800-38836000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr7:38826200-38836400	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr7:38826400-38834400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr7:38826800-38833000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr7:38827000-38836200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr7:38827200-38836400	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr7:38827400-38834400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr7:38827400-38834400	Strong transcription	Fetal Intestine Large	intestine
37	chr7:38827400-38836400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr7:38827600-38835400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr7:38827600-38835800	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr7:38828200-38836200	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr7:38828400-38835400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr7:38828600-38835400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr7:38828600-38836400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr7:38829200-38835000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr7:38829200-38837200	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr7:38829400-38832800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr7:38829400-38834600	Weak transcription	Fetal Lung	lung
48	chr7:38829400-38835200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr7:38829400-38836000	Weak transcription	Fetal Brain Female	brain
50	chr7:38829400-38836200	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links