The 2.0 version of rSNPBase

Variant report

Variant rs552299031
Chromosome Location chr7:38833887-38833888
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:115 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:38757200-38835400 Weak transcription Psoas Muscle Psoas
2 chr7:38784800-38835000 Weak transcription NHEK skin
3 chr7:38785600-38834600 Weak transcription HMEC breast
4 chr7:38785600-38835000 Weak transcription NH-A brain
5 chr7:38793400-38861200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
6 chr7:38800200-38837600 Weak transcription H9 Cell Line embryonic stem cell
7 chr7:38803200-38845400 Weak transcription Colonic Mucosa Colon
8 chr7:38803200-38846000 Weak transcription Primary T killer memory cells from peripheral blood blood
9 chr7:38804400-38836200 Weak transcription Fetal Brain Male brain
10 chr7:38812800-38834800 Weak transcription HSMMtube muscle
11 chr7:38813800-38834200 Weak transcription Primary T killer naive cells fromperipheralblood blood
12 chr7:38813800-38836400 Weak transcription HUVEC blood vessel
13 chr7:38813800-38839600 Weak transcription Right Ventricle heart
14 chr7:38813800-38857400 Weak transcription HSMM muscle
15 chr7:38820000-38836600 Strong transcription Monocytes-CD14+_RO01746 blood
16 chr7:38822200-38837400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
17 chr7:38822400-38836400 Weak transcription HUES48 Cell Line embryonic stem cell
18 chr7:38822400-38855200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr7:38823600-38835400 Strong transcription Primary monocytes fromperipheralblood blood
20 chr7:38824800-38836400 Strong transcription Primary B cells from cord blood blood
21 chr7:38825000-38837800 Weak transcription Fetal Heart heart
22 chr7:38825200-38836400 Strong transcription Primary B cells from peripheral blood blood
23 chr7:38825600-38834600 Strong transcription Breast Myoepithelial Primary Cells Breast
24 chr7:38825600-38835800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
25 chr7:38825600-38835800 Strong transcription GM12878-XiMat blood
26 chr7:38825800-38835600 Strong transcription Adipose Nuclei Adipose
27 chr7:38825800-38836000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
28 chr7:38826200-38836400 Strong transcription Primary T helper cells fromperipheralblood blood
29 chr7:38826400-38834400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
30 chr7:38827000-38836200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
31 chr7:38827200-38836400 Strong transcription Rectal Mucosa Donor 29 rectum
32 chr7:38827400-38834400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
33 chr7:38827400-38834400 Strong transcription Fetal Intestine Large intestine
34 chr7:38827400-38836400 Strong transcription Primary hematopoietic stem cells short term culture blood
35 chr7:38827600-38835400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
36 chr7:38827600-38835800 Strong transcription Primary T cells fromperipheralblood blood
37 chr7:38828200-38836200 Strong transcription Primary neutrophils fromperipheralblood blood
38 chr7:38828400-38835400 Strong transcription Primary T helper naive cells fromperipheralblood blood
39 chr7:38828600-38835400 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
40 chr7:38828600-38836400 Strong transcription Primary T regulatory cells fromperipheralblood blood
41 chr7:38829200-38835000 Weak transcription Primary T helper naive cells from peripheral blood blood
42 chr7:38829200-38837200 Weak transcription Skeletal Muscle Female skeletal muscle
43 chr7:38829400-38834600 Weak transcription Fetal Lung lung
44 chr7:38829400-38835200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
45 chr7:38829400-38836000 Weak transcription Fetal Brain Female brain
46 chr7:38829400-38836200 Weak transcription Fetal Kidney kidney
47 chr7:38829400-38836200 Weak transcription Pancreatic Islets Pancreatic Islet
48 chr7:38829400-38836400 Weak transcription Brain Hippocampus Middle brain
49 chr7:38829400-38837200 Weak transcription Small Intestine intestine
50 chr7:38829400-38837400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015