Variant report

Variant	nsv1033326
Chromosome Location	chr4:171433814-171467530
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:171438552..171440152-chr4:171440504..171442621,2	MCF-7	breast:
2	chr4:171438552..171440152-chr4:171440504..171442621,2	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AADAT-10	chr4:171437348-171437825	l_2775_chr4:171432351-171437825_testes
2	lnc-CLCN3-10	chr4:171440477-171441429	l_2774_chr4:171384330-171431550_prostate
3	lnc-CLCN3-10	chr4:171434308-171434401	l_2774_chr4:171384330-171431550_prostate

No data

Extended variants
information (count: 217 )
Associated
traits (count: 67 )

Variant overlapped rSNPs/rCNVs (count:217 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs555296000	chr4:171434324-171434325	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs529626647	chr4:171434329-171434330	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs77871886	chr4:171434330-171434331	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs181252660	chr4:171434331-171434332	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs559029210	chr4:171434351-171434352	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs577241197	chr4:171434378-171434379	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs184924490	chr4:171434383-171434384	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs559449671	chr4:171434387-171434388	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs111227428	chr4:171434389-171434390	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs527665981	chr4:171437353-171437354	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs188991892	chr4:171437354-171437355	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs74900554	chr4:171437360-171437361	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs538061458	chr4:171437391-171437392	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs193121597	chr4:171437423-171437424	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs376526876	chr4:171437443-171437444	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs144964248	chr4:171437535-171437536	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs184221933	chr4:171437542-171437543	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs149814515	chr4:171437564-171437565	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs7658068	chr4:171437659-171437660	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs188980480	chr4:171437669-171437670	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs191498055	chr4:171437670-171437671	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs71622394	chr4:171437673-171437674	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs112117016	chr4:171437697-171437698	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs113332390	chr4:171437713-171437714	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs114667630	chr4:171437723-171437724	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs148126751	chr4:171437747-171437748	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs201844318	chr4:171437748-171437749	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs139763700	chr4:171437757-171437758	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs200842759	chr4:171437759-171437760	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs70964286	chr4:171437760-171437761	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs60192362	chr4:171437761-171437762	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs544490450	chr4:171437770-171437771	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs56863301	chr4:171437776-171437777	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs201666712	chr4:171437777-171437778	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs66935863	chr4:171437778-171437779	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs58279607	chr4:171437782-171437783	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs57178380	chr4:171437784-171437785	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs59942858	chr4:171437795-171437796	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs140938351	chr4:171437797-171437798	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs35700795	chr4:171437798-171437799	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs398108309	chr4:171437810-171437811	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs115604653	chr4:171437814-171437815	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs557200745	chr4:171440479-171440480	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs149865988	chr4:171440492-171440493	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs540995758	chr4:171440493-171440494	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs34641395	chr4:171440514-171440515	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs2661077	chr4:171440522-171440523	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs374739603	chr4:171440591-171440592	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs79714469	chr4:171440613-171440614	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs541633233	chr4:171440625-171440626	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:67)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Wilms tumour	21544195	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
primary effusion lymphomas	17116491	CNVD
Breast cancer	16272173	CNVD
Breast cancer	17133270	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Testicular germ cell tumor	18059402	CNVD
Ovarian cancer	22174824	CNVD
Olfactory neuroblastoma	18408657	CNVD
Breast cancer	21785460	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	21633010	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20581869	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	17053054	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
abnormal development	18461090	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Neuroblastoma	16790693	CNVD
Developmental delay	22127048	CNVD
Autism	20808228	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:171443000-171443800	Enhancers	Aorta	Aorta
2	chr4:171451000-171451400	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr4:171451400-171451600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr4:171451600-171452600	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr4:171459600-171460800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links