Variant report
| Variant | rs2661077 |
|---|---|
| Chromosome Location | chr4:171440522-171440523 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:171438552..171440152-chr4:171440504..171442621,2 | MCF-7 | breast: |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CLCN3-10 | chr4:171440477-171441429 | l_2774_chr4:171384330-171431550_prostate |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs1507691 | 0.90[ASN][1000 genomes] |
| rs1507692 | 0.90[ASN][1000 genomes] |
| rs1507702 | 0.95[ASN][1000 genomes] |
| rs17661922 | 0.82[EUR][1000 genomes] |
| rs1830410 | 0.83[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2612426 | 0.92[ASN][1000 genomes] |
| rs2612430 | 0.95[ASN][1000 genomes] |
| rs379796 | 0.87[EUR][1000 genomes] |
| rs7658068 | 0.94[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1032666 | chr4:171402225-171552857 | Flanking Active TSS Active TSS Enhancers ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv830151 | chr4:171423566-171577867 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1033326 | chr4:171433814-171467530 | Enhancers Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
