Variant report

Variant	rs1830410
Chromosome Location	chr4:171432980-171432981
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1507691	0.85[ASN][1000 genomes]
rs1507692	0.85[ASN][1000 genomes]
rs1507702	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2612426	0.87[ASN][1000 genomes]
rs2612430	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2661077	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7658068	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880492	chr4:171386268-171433137	Active TSS Flanking Active TSS Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1032666	chr4:171402225-171552857	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830151	chr4:171423566-171577867	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links