Variant report

Variant	nsv1035935
Chromosome Location	chr12:1400974-1608625
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1351)
CpG islands
(count:915)
Chromatin interactive
region (count:92)
LncRNA
region (count:18)
Mature miRNA
region (count: 0)
miRNA target
sites (count:1)

(count:1351 , 50 per page) page: 1 2 3 4 5 6 7 ... 28

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr12:1421332-1421477	HepG2	liver:	n/a	n/a
2	ARID3A	chr12:1513918-1514099	HepG2	liver:	n/a	n/a
3	ARID3A	chr12:1413432-1413886	K562	blood:	n/a	n/a
4	ARID3A	chr12:1573073-1573605	K562	blood:	n/a	n/a
5	ARID3A	chr12:1548870-1549271	K562	blood:	n/a	n/a
6	ARID3A	chr12:1439453-1440075	K562	blood:	n/a	n/a
7	ARID3A	chr12:1414970-1415758	K562	blood:	n/a	n/a
8	ATF1	chr12:1478673-1479061	K562	blood:	n/a	n/a
9	ATF1	chr12:1573138-1573542	K562	blood:	n/a	n/a
10	ATF1	chr12:1601112-1601913	K562	blood:	n/a	n/a
11	ATF1	chr12:1413341-1413803	K562	blood:	n/a	n/a
12	ATF1	chr12:1548886-1549239	K562	blood:	n/a	n/a
13	ATF2	chr12:1554914-1555407	H1-hESC	embryonic stem cell:	n/a	n/a
14	ATF2	chr12:1554977-1555407	H1-hESC	embryonic stem cell:	n/a	n/a
15	ATF3	chr12:1579314-1579512	K562	blood:	n/a	n/a
16	ATF3	chr12:1413585-1413901	K562	blood:	n/a	n/a
17	BACH1	chr12:1578414-1578550	H1-hESC	embryonic stem cell:	n/a	n/a
18	BACH1	chr12:1468522-1468818	H1-hESC	embryonic stem cell:	n/a	n/a
19	BACH1	chr12:1434024-1434443	K562	blood:	n/a	chr12:1434243-1434257
20	BACH1	chr12:1434120-1434378	H1-hESC	embryonic stem cell:	n/a	chr12:1434243-1434257
21	BACH1	chr12:1464814-1464955	H1-hESC	embryonic stem cell:	n/a	n/a
22	BATF	chr12:1492872-1493055	GM12878	blood:	n/a	chr12:1492968-1492979
23	BATF	chr12:1434858-1435166	GM12878	blood:	n/a	chr12:1435047-1435057 chr12:1435046-1435057 chr12:1434932-1434942
24	BATF	chr12:1434831-1435242	GM12878	blood:	n/a	chr12:1435047-1435057 chr12:1435046-1435057 chr12:1434932-1434942
25	BCL11A	chr12:1555006-1555390	H1-hESC	embryonic stem cell:	n/a	n/a
26	BCL11A	chr12:1498062-1498335	GM12878	blood:	n/a	n/a
27	BCL3	chr12:1416066-1416277	GM12878	blood:	n/a	n/a
28	BCL3	chr12:1553878-1554120	GM12878	blood:	n/a	n/a
29	BHLHE40	chr12:1601355-1601799	K562	blood:	n/a	n/a
30	BHLHE40	chr12:1479409-1479609	GM12878	blood:	n/a	n/a
31	BHLHE40	chr12:1598063-1598396	GM12878	blood:	n/a	n/a
32	BHLHE40	chr12:1437610-1437992	K562	blood:	n/a	n/a
33	BHLHE40	chr12:1544710-1545039	HepG2	liver:	n/a	n/a
34	BHLHE40	chr12:1532366-1532460	GM12878	blood:	n/a	n/a
35	BHLHE40	chr12:1579235-1579624	K562	blood:	n/a	chr12:1579424-1579433 chr12:1579424-1579433
36	BHLHE40	chr12:1586512-1586665	K562	blood:	n/a	n/a
37	BHLHE40	chr12:1413385-1413932	K562	blood:	n/a	n/a
38	BHLHE40	chr12:1545122-1545985	K562	blood:	n/a	chr12:1545828-1545841
39	BRCA1	chr12:1564047-1564155	Hela-S3	cervix:	n/a	n/a
40	CBX3	chr12:1409679-1410060	K562	blood:	n/a	n/a
41	CBX3	chr12:1413501-1413814	K562	blood:	n/a	n/a
42	CBX3	chr12:1530240-1530689	HCT-116	colon:	n/a	n/a
43	CBX3	chr12:1530189-1530748	K562	blood:	n/a	n/a
44	CBX3	chr12:1530310-1530628	K562	blood:	n/a	n/a
45	CBX3	chr12:1530225-1530719	HCT-116	colon:	n/a	n/a
46	CBX3	chr12:1572303-1572650	K562	blood:	n/a	n/a
47	CBX3	chr12:1413384-1413885	K562	blood:	n/a	chr12:1413421-1413432
48	CCNT2	chr12:1601047-1601641	K562	blood:	n/a	n/a
49	CCNT2	chr12:1413382-1413875	K562	blood:	n/a	n/a
50	CCNT2	chr12:1573232-1573550	K562	blood:	n/a	n/a

(count:915 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr12:1485599-1485649	AG09309	skin:	n/a
2	chr12:1428039-1428089	LNCaP	prostate:	n/a
3	chr12:1485599-1485649	U87	brain:	n/a
4	chr12:1466280-1466330	NHDF-neo	bronchial:	n/a
5	chr12:1459744-1459794	H1-hESC	embryonic stem cell:	embryo
6	chr12:1605950-1606000	AG09309	skin:	n/a
7	chr12:1485599-1485649	SAEC	small airway:	n/a
8	chr12:1482931-1482981	HMEC	breast:	n/a
9	chr12:1466280-1466330	Jurkat	blood:	n/a
10	chr12:1553525-1553575	PrEC	prostate:	n/a
11	chr12:1482931-1482981	Hepatocyte	liver:	n/a
12	chr12:1605950-1606000	AoSMC	blood vessel:	n/a
13	chr12:1566674-1566724	MCF10A-Er-Src	breast:	n/a
14	chr12:1485704-1485754	AG04449	skin:	fetal
15	chr12:1602312-1602362	K562	blood:	n/a
16	chr12:1459744-1459794	PrEC	prostate:	n/a
17	chr12:1428039-1428089	GM06990	blood:	n/a
18	chr12:1553525-1553575	U87	brain:	n/a
19	chr12:1605950-1606000	LNCaP	prostate:	n/a
20	chr12:1499803-1499853	HCPEpiC	choroid plexus:	n/a
21	chr12:1602312-1602362	HCPEpiC	choroid plexus:	n/a
22	chr12:1566674-1566724	A549	lung:	n/a
23	chr12:1478761-1478811	MCF-7	breast:	n/a
24	chr12:1602312-1602362	HAEpiC	amniotic membrane:	n/a
25	chr12:1598243-1598293	BE2_C	brain:	n/a
26	chr12:1485599-1485649	NH-A	brain:	n/a
27	chr12:1459744-1459794	AG09309	skin:	n/a
28	chr12:1499803-1499853	SK-N-MC	brain:	n/a
29	chr12:1598243-1598293	RPTEC	kidney:	n/a
30	chr12:1428039-1428089	PFSK-1	brain:	n/a
31	chr12:1485599-1485649	HL-60	blood:	n/a
32	chr12:1489532-1489582	HepG2	liver:	n/a
33	chr12:1485704-1485754	K562	blood:	n/a
34	chr12:1499803-1499853	K562	blood:	n/a
35	chr12:1485599-1485649	NHBE	bronchial:	n/a
36	chr12:1459744-1459794	Hepatocyte	liver:	n/a
37	chr12:1485704-1485754	RPTEC	kidney:	n/a
38	chr12:1598243-1598293	HNPCEpiC	eye:	n/a
39	chr12:1485704-1485754	T-47D	breast:	n/a
40	chr12:1485704-1485754	Hela-S3	cervix:	n/a
41	chr12:1566674-1566724	SK-N-MC	brain:	n/a
42	chr12:1499803-1499853	AG10803	skin:	n/a
43	chr12:1485599-1485649	MCF-7	breast:	n/a
44	chr12:1553525-1553575	NHDF-neo	bronchial:	n/a
45	chr12:1485704-1485754	HAEpiC	amniotic membrane:	n/a
46	chr12:1602312-1602362	ProgFib	skin:	n/a
47	chr12:1459744-1459794	ovcar-3	ovarian:	n/a
48	chr12:1482931-1482981	K562	blood:	n/a
49	chr12:1489532-1489582	Hela-S3	cervix:	n/a
50	chr12:1566674-1566724	NT2-D1	testis:	n/a

(count:92 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr12:1484589..1487489-chr12:1514413..1516038,2	K562	blood:
2	chr12:1545095..1547287-chr12:1641789..1644190,2	K562	blood:
3	chr12:1571396..1573540-chr12:1576737..1578978,2	K562	blood:
4	chr12:1540247..1543011-chr12:1543041..1545032,3	MCF-7	breast:
5	chr12:1426355..1428057-chr12:1451874..1454718,2	K562	blood:
6	chr12:1419089..1421502-chr12:1422085..1425058,2	K562	blood:
7	chr12:1565787..1568238-chr12:1569679..1572728,3	K562	blood:
8	chr12:1412977..1415472-chr12:1434377..1436280,2	K562	blood:
9	chr12:1555691..1558581-chr12:1571205..1573342,2	K562	blood:
10	chr12:1483885..1486721-chr12:1488016..1490382,2	K562	blood:
11	chr12:1577937..1578888-chr12:1653877..1654562,2	MCF-7	breast:
12	chr12:1435926..1439325-chr12:1439627..1443045,4	K562	blood:
13	chr12:1437851..1440138-chr12:1641572..1643434,2	K562	blood:
14	chr12:1401709..1403749-chr12:1700206..1701760,2	K562	blood:
15	chr12:1322894..1325087-chr12:1546213..1548025,2	K562	blood:
16	chr12:1426355..1428057-chr12:1451874..1454718,2	K562	blood:
17	chr12:1576576..1578608-chr12:1579584..1581182,2	MCF-7	breast:
18	chr12:1511281..1513414-chr12:1522113..1524386,2	K562	blood:
19	chr12:1418721..1420393-chr12:1437900..1440876,2	K562	blood:
20	chr12:1409715..1412266-chr12:1421688..1423807,2	K562	blood:
21	chr12:1424048..1426819-chr12:1445516..1448128,2	MCF-7	breast:
22	chr12:1607941..1609659-chr12:1618774..1621179,2	K562	blood:
23	chr12:1570379..1574393-chr12:1574873..1580232,6	K562	blood:
24	chr12:1598160..1599823-chr12:1609239..1611026,2	K562	blood:
25	chr12:1574896..1578788-chr12:1580467..1583397,5	K562	blood:
26	chr12:1446375..1449359-chr12:1461325..1463031,2	K562	blood:
27	chr12:1571885..1573568-chr12:1607878..1609868,2	K562	blood:
28	chr12:1569039..1571648-chr12:1571859..1575051,3	K562	blood:
29	chr12:1576576..1578608-chr12:1579584..1581182,2	MCF-7	breast:
30	chr12:1590718..1593050-chr12:1598985..1600530,2	MCF-7	breast:
31	chr12:1585013..1587408-chr12:1589984..1592160,3	K562	blood:
32	chr12:1414726..1416432-chr12:1418579..1420289,2	K562	blood:
33	chr12:1495608..1498215-chr12:1504232..1506102,2	MCF-7	breast:
34	chr12:1446335..1449950-chr12:1451320..1454152,3	K562	blood:
35	chr12:1484589..1487489-chr12:1514413..1516038,2	K562	blood:
36	chr12:1428172..1430846-chr12:1431367..1432976,2	K562	blood:
37	chr12:1434502..1436559-chr12:1440756..1442388,2	K562	blood:
38	chr12:1446527..1449359-chr12:1461325..1463038,2	K562	blood:
39	chr12:1603741..1607368-chr12:1607408..1611542,6	K562	blood:
40	chr12:1585013..1587408-chr12:1589984..1592160,3	K562	blood:
41	chr12:1414809..1417006-chr12:1420746..1423369,2	K562	blood:
42	chr12:1478838..1481812-chr12:1484445..1488758,4	K562	blood:
43	chr12:1572175..1574157-chr12:1679717..1682384,2	K562	blood:
44	chr12:1570379..1574393-chr12:1574873..1580232,6	K562	blood:
45	chr12:1603741..1607368-chr12:1607408..1611542,6	K562	blood:
46	chr12:1409715..1412266-chr12:1421688..1423807,2	K562	blood:
47	chr12:1588629..1590747-chr12:1599822..1601479,2	K562	blood:
48	chr12:1574896..1578285-chr12:1580467..1583397,5	K562	blood:
49	chr12:1414726..1416432-chr12:1418579..1420289,2	K562	blood:
50	chr12:1446375..1449359-chr12:1461325..1463031,2	K562	blood:

(count:18 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WNT5B-2	chr12:1537296-1537353	l_579_chr12:1534935-1538482_brain
2	lnc-WNT5B-5	chr12:1481894-1483851	l_578_NR_028415
3	lnc-WNT5B-2	chr12:1534936-1535759	l_579_chr12:1534935-1538482_brain
4	lnc-WNT5B-4	chr12:1495750-1496153	ENSG00000267285.1
5	lnc-WNT5B-5	chr12:1479918-1480203	l_578_NR_028415
6	lnc-WNK1-3	chr12:1603215-1605096	NONHSAT025395
7	lnc-WNT5B-4	chr12:1494999-1495168	ENSG00000267285.1
8	lnc-WNT5B-3	chr12:1526670-1527796	NONHSAT025390
9	lnc-WNT5B-2	chr12:1537658-1538482	l_579_chr12:1534935-1538482_brain
10	lnc-WNT5B-6	chr12:1420758-1422780	NONHSAT025386
11	lnc-FBXL14-3	chr12:1489226-1490399	ENSG00000249028.2
12	lnc-WNT5B-3	chr12:1527811-1527832	NONHSAT025390
13	lnc-WNK1-3	chr12:1553728-1553796	NONHSAT025391
14	lnc-FBXL14-3	chr12:1489226-1490399	ENSG00000249028
15	lnc-FBXL14-3	chr12:1499755-1500668	ENSG00000249028.2
16	lnc-WNK1-3	chr12:1539443-1539964	NONHSAT025391
17	lnc-FBXL14-3	chr12:1499759-1500668	ENSG00000249028
18	lnc-WNT5B-3	chr12:1527841-1529046	NONHSAT025390

No data

(count:1 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	ERC1	hsa-miR-26b-5p	chr12:1553734-1553754

Variant related genes	Relation type
ERC1	TF binding region
ENSG00000267285	TF binding region
ENSG00000249028	TF binding region
ERC1	CpG island
ENSG00000267285	CpG island
ENSG00000249028	CpG island
ENSG00000082805	chromatin interactions
TMEM14A	miRNA target sites
NFYB	miRNA target sites

Extended variants
information (count: 9065 )
Associated
traits (count: 87 )

Variant overlapped rSNPs/rCNVs (count:9065 , 50 per page) page: 1 2 3 4 5 6 7 ... 182

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs561285024	chr12:1401018-1401019	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs141583408	chr12:1401130-1401131	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs546543804	chr12:1401139-1401140	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs7958662	chr12:1401140-1401141	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs566322229	chr12:1401286-1401287	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs146188339	chr12:1401324-1401325	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs139056751	chr12:1401455-1401456	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs113887258	chr12:1401483-1401484	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs189286809	chr12:1401563-1401564	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs144827389	chr12:1401579-1401580	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs558474603	chr12:1401590-1401591	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs116834367	chr12:1401611-1401612	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs12299483	chr12:1401636-1401637	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs182071866	chr12:1401645-1401646	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs570127423	chr12:1401655-1401656	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs73595963	chr12:1401675-1401676	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs555860942	chr12:1401729-1401730	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs558857103	chr12:1401786-1401787	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs185043439	chr12:1401820-1401821	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs574201629	chr12:1401822-1401823	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs114805445	chr12:1401890-1401891	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs11061687	chr12:1401898-1401899	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs148571921	chr12:1401901-1401902	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs552825157	chr12:1401904-1401905	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs189990132	chr12:1401905-1401906	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs542897951	chr12:1401929-1401930	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs554744056	chr12:1401946-1401947	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs142928812	chr12:1401947-1401948	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs543730841	chr12:1401998-1401999	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs181208564	chr12:1402006-1402007	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs532438737	chr12:1402038-1402039	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs553084938	chr12:1402079-1402080	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs559637585	chr12:1402087-1402088	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs185268279	chr12:1402155-1402156	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs117334339	chr12:1402179-1402180	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs189737636	chr12:1402190-1402191	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs578007768	chr12:1402240-1402241	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs368670125	chr12:1402258-1402259	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs12314210	chr12:1402289-1402290	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs111943378	chr12:1402290-1402291	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs530694478	chr12:1402306-1402307	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs77500759	chr12:1402311-1402312	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs61009778	chr12:1402330-1402331	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs57125493	chr12:1402349-1402350	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs113792696	chr12:1402386-1402387	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs552926710	chr12:1402392-1402393	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs567915198	chr12:1402396-1402397	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs535183851	chr12:1402406-1402407	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs556614124	chr12:1402424-1402425	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs112719979	chr12:1402437-1402438	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:87)

Disease	PMID	Source
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
Glaucoma	21310917	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Malignant peripheral nerve sheath tumor	19844265	CNVD
Squamous cell cancer	19607727	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Mental retardation	17847001	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
abnormal development	18461090	CNVD
Ovarian cancer	20844748	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Medulloblastoma	16968546	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Breast cancer	22032731	CNVD
Cancer	21183584	CNVD
Myxofibrosarcoma	16751306	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Prostate cancer	21965145	CNVD
Acute myeloid leukemia	16864856	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Disorders of sex development	21048976	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Prostate cancer	19156837	CNVD
Emphysema	19352772	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Malignant germ cell tumour	17285132	CNVD
Melanoma	18172304	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Wilms tumour	21544195	CNVD
Squamous cell cancer	21044232	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	19960244	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Breast cancer	21264507	CNVD
Cancer	16751803	CNVD
Testicular cancer	18059402	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Seminomas	18059402	CNVD
Esophageal cancer	21851588	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Testicular germ cell tumor	18059402	CNVD
Malaria	21533027	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21509527	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21785460	CNVD
Ovarian cancer	21720365	CNVD
Myelodysplastic syndrome	21251322	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD
Cancer	17440070	CNVD
Autism	22495311	CNVD
Pancreatic cancer	17952125	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	23813976	CNVD
Melanoma	20877625	CNVD
Ewing''s sarcoma	19144156	CNVD

Chromatin state (count:4094 , 50 per page) page: 1 2 3 4 5 6 7 ... 82

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:1334200-1425000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:1341800-1420000	Weak transcription	Esophagus	oesophagus
3	chr12:1364800-1408600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr12:1366600-1418000	Weak transcription	Lung	lung
5	chr12:1369400-1427600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr12:1373600-1402600	Weak transcription	Hela-S3	cervix
7	chr12:1373800-1410400	Weak transcription	Fetal Intestine Small	intestine
8	chr12:1374200-1404200	Weak transcription	Left Ventricle	heart
9	chr12:1374200-1423200	Weak transcription	NHEK	skin
10	chr12:1375200-1419800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr12:1375400-1404200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr12:1387400-1453400	Weak transcription	Thymus	Thymus
13	chr12:1387600-1404600	Weak transcription	Fetal Heart	heart
14	chr12:1387600-1441400	Weak transcription	HepG2	liver
15	chr12:1391200-1434000	Weak transcription	A549	lung
16	chr12:1391600-1406000	Weak transcription	Osteobl	bone
17	chr12:1391600-1427800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr12:1391800-1421600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr12:1392200-1409600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr12:1392200-1413200	Weak transcription	K562	blood
21	chr12:1392400-1404000	Weak transcription	Brain Anterior Caudate	brain
22	chr12:1392400-1405400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr12:1392400-1406600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr12:1392400-1411200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr12:1392400-1414200	Weak transcription	Psoas Muscle	Psoas
26	chr12:1392400-1414600	Weak transcription	Brain Hippocampus Middle	brain
27	chr12:1392400-1422200	Weak transcription	Ovary	ovary
28	chr12:1392600-1403600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr12:1392600-1415000	Weak transcription	HSMMtube	muscle
30	chr12:1392800-1415400	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr12:1393000-1413400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr12:1393200-1427400	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr12:1394200-1401600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr12:1394200-1401800	Weak transcription	Fetal Muscle Trunk	muscle
35	chr12:1394400-1402800	Weak transcription	Dnd41	blood
36	chr12:1395200-1428000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr12:1396200-1404200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr12:1396800-1408600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr12:1397000-1409200	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr12:1397400-1406000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr12:1397600-1408600	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr12:1397800-1401000	Enhancers	Primary monocytes fromperipheralblood	blood
43	chr12:1398000-1403400	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr12:1398800-1401200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr12:1398800-1401200	Strong transcription	Primary T cells from cord blood	blood
46	chr12:1398800-1401200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr12:1399000-1401200	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr12:1399000-1401200	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr12:1399000-1401200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr12:1399000-1401200	Strong transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links