Variant report

Variant	nsv1036153
Chromosome Location	chr15:42098896-42188035
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2064)
CpG islands
(count:2443)
Chromatin interactive
region (count:122)
LncRNA
region (count:30)
Mature miRNA
region (count: 1)
miRNA target
sites (count:0)

(count:2064 , 50 per page) page: 1 2 3 4 5 6 7 ... 42

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr15:42103689-42103944	HepG2	liver:	n/a	n/a
2	ARID3A	chr15:42098884-42098958	HepG2	liver:	n/a	n/a
3	ATF2	chr15:42120392-42120793	H1-hESC	embryonic stem cell:	n/a	n/a
4	ATF2	chr15:42186885-42187315	GM12878	blood:	n/a	n/a
5	ATF3	chr15:42187005-42187159	K562	blood:	n/a	n/a
6	BACH1	chr15:42119616-42119901	H1-hESC	embryonic stem cell:	n/a	n/a
7	BACH1	chr15:42174187-42174314	H1-hESC	embryonic stem cell:	n/a	n/a
8	BACH1	chr15:42120297-42120875	H1-hESC	embryonic stem cell:	n/a	n/a
9	BACH1	chr15:42120372-42120572	K562	blood:	n/a	n/a
10	BACH1	chr15:42103600-42103904	K562	blood:	n/a	n/a
11	BACH1	chr15:42099009-42099028	H1-hESC	embryonic stem cell:	n/a	n/a
12	BATF	chr15:42187016-42187237	GM12878	blood:	n/a	chr15:42187113-42187124 chr15:42187114-42187124
13	BATF	chr15:42186963-42187346	GM12878	blood:	n/a	chr15:42187113-42187124 chr15:42187114-42187124
14	BCL3	chr15:42119375-42120626	GM12878	blood:	n/a	n/a
15	BCL3	chr15:42119603-42120243	A549	lung:	n/a	n/a
16	BCL3	chr15:42186968-42187472	GM12878	blood:	n/a	n/a
17	BCL3	chr15:42119854-42120640	A549	lung:	n/a	n/a
18	BCLAF1	chr15:42186868-42187379	GM12878	blood:	n/a	n/a
19	BHLHE40	chr15:42103579-42103945	K562	blood:	n/a	n/a
20	BHLHE40	chr15:42120145-42120737	K562	blood:	n/a	n/a
21	BHLHE40	chr15:42125043-42125353	GM12878	blood:	n/a	n/a
22	BHLHE40	chr15:42171644-42171902	K562	blood:	n/a	chr15:42171770-42171779 chr15:42171764-42171785 chr15:42171768-42171781 chr15:42171770-42171779 chr15:42171771-42171780
23	BHLHE40	chr15:42118568-42118585	K562	blood:	n/a	n/a
24	BHLHE40	chr15:42186993-42187298	GM12878	blood:	n/a	n/a
25	BHLHE40	chr15:42174084-42174352	K562	blood:	n/a	n/a
26	BHLHE40	chr15:42187157-42187530	K562	blood:	n/a	n/a
27	BHLHE40	chr15:42152267-42152554	K562	blood:	n/a	n/a
28	BHLHE40	chr15:42140864-42141081	K562	blood:	n/a	n/a
29	BHLHE40	chr15:42103567-42103935	GM12878	blood:	n/a	n/a
30	BRCA1	chr15:42120259-42120593	Hela-S3	cervix:	n/a	n/a
31	BRCA1	chr15:42187447-42187552	HepG2	liver:	n/a	n/a
32	CBX3	chr15:42174034-42174388	K562	blood:	n/a	n/a
33	CBX3	chr15:42120177-42120921	K562	blood:	n/a	n/a
34	CCNT2	chr15:42187001-42187250	K562	blood:	n/a	n/a
35	CCNT2	chr15:42119621-42120692	K562	blood:	n/a	n/a
36	CEBPB	chr15:42140879-42141129	IMR90	lung:	n/a	n/a
37	CEBPB	chr15:42142710-42143049	A549	lung:	n/a	n/a
38	CEBPB	chr15:42120322-42120676	HepG2	liver:	n/a	n/a
39	CEBPB	chr15:42142662-42143131	MCF-7	breast:	n/a	n/a
40	CEBPB	chr15:42142686-42143065	A549	lung:	n/a	n/a
41	CEBPB	chr15:42130320-42131100	HCT-116	colon:	n/a	n/a
42	CEBPB	chr15:42142620-42143113	ECC-1	luminal epithelium:	n/a	n/a
43	CEBPB	chr15:42142696-42143062	IMR90	lung:	n/a	n/a
44	CEBPB	chr15:42142700-42143050	HepG2	liver:	n/a	n/a
45	CEBPB	chr15:42103728-42103816	H1-hESC	embryonic stem cell:	n/a	n/a
46	CEBPB	chr15:42130622-42130811	H1-hESC	embryonic stem cell:	n/a	n/a
47	CEBPB	chr15:42124523-42124799	MCF-7	breast:	n/a	chr15:42124601-42124612
48	CEBPB	chr15:42130546-42130956	Hela-S3	cervix:	n/a	n/a
49	CEBPB	chr15:42124429-42124791	A549	lung:	n/a	chr15:42124601-42124612
50	CEBPB	chr15:42174115-42174137	H1-hESC	embryonic stem cell:	n/a	n/a

(count:2443 , 50 per page) page: 1 2 3 4 5 6 7 ... 49

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:42187036-42187086	LNCaP	prostate:	n/a
2	chr15:42116798-42116848	SK-N-MC	brain:	n/a
3	chr15:42187649-42187699	HCF	heart:	n/a
4	chr15:42187036-42187086	LNCaP	prostate:	n/a
5	chr15:42116798-42116848	SK-N-MC	brain:	n/a
6	chr15:42187649-42187699	HCF	heart:	n/a
7	chr15:42131658-42131708	AG04449	skin:	fetal
8	chr15:42120091-42120141	SK-N-SH	brain:	n/a
9	chr15:42120091-42120141	HPAEpiC	pulmonary alveolar:	n/a
10	chr15:42162712-42162762	U87	brain:	n/a
11	chr15:42162712-42162762	HPAEpiC	pulmonary alveolar:	n/a
12	chr15:42186945-42186995	GM12878	blood:	n/a
13	chr15:42186473-42186523	LNCaP	prostate:	n/a
14	chr15:42102381-42102431	LNCaP	prostate:	n/a
15	chr15:42120087-42120137	SK-N-MC	brain:	n/a
16	chr15:42140715-42140765	NB4	blood:	n/a
17	chr15:42130735-42130785	HCT-116	colon:	n/a
18	chr15:42129464-42129514	ovcar-3	ovarian:	n/a
19	chr15:42170125-42170175	AG09309	skin:	n/a
20	chr15:42170125-42170175	AG04450	lung:	fetal
21	chr15:42116798-42116848	Hela-S3	cervix:	n/a
22	chr15:42120082-42120132	A549	lung:	n/a
23	chr15:42141147-42141197	HRE	kidney:	n/a
24	chr15:42131658-42131708	SK-N-MC	brain:	n/a
25	chr15:42173869-42173919	Caco-2	colon:	n/a
26	chr15:42186377-42186427	ovcar-3	ovarian:	n/a
27	chr15:42118869-42118919	SKMC	muscle:	n/a
28	chr15:42129464-42129514	LNCaP	prostate:	n/a
29	chr15:42186124-42186174	HIPEpiC	eye:	n/a
30	chr15:42173869-42173919	GM19239	blood:	n/a
31	chr15:42173869-42173919	AG09309	skin:	n/a
32	chr15:42118869-42118919	T-47D	breast:	n/a
33	chr15:42120426-42120476	HPAEpiC	pulmonary alveolar:	n/a
34	chr15:42174516-42174566	Caco-2	colon:	n/a
35	chr15:42140150-42140200	RPTEC	kidney:	n/a
36	chr15:42174516-42174566	ECC-1	luminal epithelium:	n/a
37	chr15:42140715-42140765	NHBE	bronchial:	n/a
38	chr15:42131658-42131708	GM12891	blood:	n/a
39	chr15:42178365-42178415	ProgFib	skin:	n/a
40	chr15:42119864-42119914	ovcar-3	ovarian:	n/a
41	chr15:42174516-42174566	CMK	blood:	n/a
42	chr15:42118869-42118919	GM12892	blood:	n/a
43	chr15:42116798-42116848	PFSK-1	brain:	n/a
44	chr15:42120362-42120412	IMR90	lung:	fetal
45	chr15:42102381-42102431	SAEC	small airway:	n/a
46	chr15:42187036-42187086	PANC-1	pancreas:	n/a
47	chr15:42186124-42186174	U87	brain:	n/a
48	chr15:42174516-42174566	PFSK-1	brain:	n/a
49	chr15:42178365-42178415	RPTEC	kidney:	n/a
50	chr15:42140715-42140765	AG10803	skin:	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr15:42119641..42122495-chr15:42123255..42125312,3	K562	blood:
2	chr15:42129367..42131992-chr15:42144303..42147962,3	K562	blood:
3	chr15:42128850..42133555-chr15:42135364..42139036,5	K562	blood:
4	chr15:42146846..42149806-chr15:42162512..42164389,2	K562	blood:
5	chr15:42130329..42131971-chr15:42170676..42172452,2	K562	blood:
6	chr15:42165119..42167610-chr15:42168028..42170441,2	K562	blood:
7	chr15:42157479..42160214-chr15:42160930..42163117,2	MCF-7	breast:
8	chr15:42154642..42156337-chr15:42158761..42160269,2	K562	blood:
9	chr15:42153612..42155605-chr15:42159642..42162019,2	MCF-7	breast:
10	chr15:42119185..42121349-chr15:42128797..42131937,4	MCF-7	breast:
11	chr15:42122872..42126047-chr15:42126791..42131021,4	K562	blood:
12	chr15:42161749..42164625-chr15:42167618..42170271,3	K562	blood:
13	chr15:42105041..42106569-chr15:42108766..42110303,2	K562	blood:
14	chr15:42136531..42140635-chr15:42140718..42144467,4	MCF-7	breast:
15	chr15:42136531..42140635-chr15:42140718..42144467,4	MCF-7	breast:
16	chr15:42119169..42123691-chr15:42124459..42130624,7	MCF-7	breast:
17	chr15:42119641..42122495-chr15:42123255..42125312,3	K562	blood:
18	chr15:42122872..42126047-chr15:42126791..42131021,4	K562	blood:
19	chr15:42090667..42093233-chr15:42097205..42099737,2	K562	blood:
20	chr15:42106183..42109859-chr15:42118195..42121802,3	K562	blood:
21	chr15:42107512..42109083-chr15:42109246..42111016,2	MCF-7	breast:
22	chr15:42121774..42125537-chr15:42128092..42132193,4	MCF-7	breast:
23	chr15:42181594..42183460-chr15:42186970..42189193,2	K562	blood:
24	chr15:42133144..42136683-chr15:42139373..42142777,4	K562	blood:
25	chr15:42119559..42121524-chr15:42137744..42139506,3	K562	blood:
26	chr15:42065831..42068593-chr15:42098636..42100420,3	MCF-7	breast:
27	chr15:42127281..42132563-chr15:42140689..42145219,5	K562	blood:
28	chr15:42144528..42146188-chr15:42157927..42160220,2	K562	blood:
29	chr15:42153612..42155605-chr15:42159642..42162019,2	MCF-7	breast:
30	chr15:42127281..42132563-chr15:42140689..42145219,5	K562	blood:
31	chr15:42105041..42106569-chr15:42108766..42110303,2	K562	blood:
32	chr15:42119178..42121855-chr15:42127765..42129934,4	K562	blood:
33	chr15:42102419..42105107-chr15:42118936..42121739,2	MCF-7	breast:
34	chr15:42126911..42129447-chr15:42131730..42134137,2	MCF-7	breast:
35	chr15:42150747..42152641-chr15:42159994..42161645,2	K562	blood:
36	chr15:42139809..42142475-chr15:42153474..42155142,2	MCF-7	breast:
37	chr15:42154642..42156337-chr15:42158761..42160269,2	K562	blood:
38	chr15:42158957..42162002-chr15:42162445..42164349,3	K562	blood:
39	chr15:42066441..42067175-chr15:42103083..42104316,4	MCF-7	breast:
40	chr15:42065876..42068807-chr15:42118615..42122663,5	K562	blood:
41	chr15:42158306..42160718-chr15:42164813..42167241,2	K562	blood:
42	chr15:42169351..42171668-chr15:42175525..42178438,2	K562	blood:
43	chr15:42111390..42114154-chr15:42114914..42116415,2	K562	blood:
44	chr15:42169311..42172233-chr15:42179875..42182296,2	MCF-7	breast:
45	chr15:42145763..42147692-chr15:42149451..42151046,2	K562	blood:
46	chr15:42147889..42150225-chr15:42151669..42154619,2	MCF-7	breast:
47	chr15:42064494..42065972-chr15:42098576..42099124,3	MCF-7	breast:
48	chr15:42120261..42121983-chr15:42263562..42265205,2	MCF-7	breast:
49	chr15:42120316..42120831-chr6:33239585..33240107,2	NB4	blood:
50	chr15:42143417..42146188-chr15:42158720..42160287,2	K562	blood:

(count:30 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SPTBN5-1	chr15:42119935-42120134	ENSG00000250379.1
2	lnc-JMJD7-PLA2G4B-2	chr15:42187721-42188135	NONHSAT041976
3	lnc-JMJD7-PLA2G4B-1	chr15:42187183-42188141	ENSG00000174171.3
4	lnc-JMJD7-PLA2G4B-1	chr15:42187782-42187867	ENSG00000174171.3
5	lnc-JMJD7-PLA2G4B-6	chr15:42102959-42103143	NONHSAT041963
6	lnc-JMJD7-PLA2G4B-6	chr15:42103376-42103524	NONHSAT041963
7	lnc-JMJD7-PLA2G4B-6	chr15:42115645-42115674	NONHSAT041966
8	lnc-JMJD7-PLA2G4B-1	chr15:42187383-42187534	ENSG00000174171.3
9	lnc-JMJD7-PLA2G4B-2	chr15:42184974-42185276	NONHSAT041976
10	lnc-JMJD7-PLA2G4B-2	chr15:42184987-42185019	NONHSAT041977
11	lnc-SPTBN5-1	chr15:42119835-42120053	ENSG00000250379.1
12	lnc-JMJD7-PLA2G4B-6	chr15:42111270-42111610	NONHSAT041965
13	lnc-JMJD7-PLA2G4B-1	chr15:42187980-42188141	ENSG00000174171.3
14	lnc-JMJD7-PLA2G4B-1	chr15:42187778-42188133	ENSG00000174171.3
15	lnc-JMJD7-PLA2G4B-7	chr15:42100589-42100698	NONHSAT041962
16	lnc-SPTBN5-1	chr15:42117297-42117571	ENSG00000250379.1
17	lnc-JMJD7-PLA2G4B-1	chr15:42184991-42185019	ENSG00000174171.3
18	lnc-JMJD7-PLA2G4B-2	chr15:42187778-42188079	NONHSAT041981
19	lnc-SPTBN5-1	chr15:42118224-42118517	ENSG00000250379.1
20	lnc-JMJD7-PLA2G4B-2	chr15:42184991-42185019	ENSG00000174171.4
21	lnc-JMJD7-PLA2G4B-2	chr15:42185255-42185276	NONHSAT041981
22	lnc-JMJD7-PLA2G4B-2	chr15:42185134-42186566	NONHSAT041977
23	lnc-JMJD7-PLA2G4B-1	chr15:42184991-42187534	ENSG00000174171.3
24	lnc-EHD4-1	chr15:42140569-42140826	NONHSAT041973
25	lnc-EHD4-1	chr15:42142067-42142770	NONHSAT041973
26	lnc-JMJD7-PLA2G4B-2	chr15:42187778-42188134	NONHSAT041977
27	lnc-JMJD7-PLA2G4B-6	chr15:42114848-42115420	NONHSAT041966
28	lnc-JMJD7-PLA2G4B-7	chr15:42101244-42102741	NONHSAT041962
29	lnc-JMJD7-PLA2G4B-2	chr15:42185242-42185276	NONHSAT041980
30	lnc-SPTBN5-1	chr15:42118612-42118721	ENSG00000250379.1

miRNA name	Chromosome Location	mirBase accession
hsa-miR-4310	chr15:42158703-42158718	MIMAT0016862

No data

Variant related genes	Relation type
PLA2G4B	TF binding region
MIR4310	TF binding region
ENSG00000174171	TF binding region
JMJD7-PLA2G4B	TF binding region
ENSG00000250379	TF binding region
MAPKBP1	TF binding region
SPTBN5	TF binding region
JMJD7	TF binding region
RNA5SP393	TF binding region
PLA2G4B	CpG island
MIR4310	CpG island
ENSG00000174171	CpG island
JMJD7-PLA2G4B	CpG island
ENSG00000250379	CpG island
MAPKBP1	CpG island
SPTBN5	CpG island
JMJD7	CpG island
RNA5SP393	CpG island
ENSG00000137877	chromatin interactions
ENSG00000200293	chromatin interactions
ENSG00000168970	chromatin interactions
ENSG00000062524	chromatin interactions
ENSG00000243708	chromatin interactions
ENSG00000246740	chromatin interactions
ENSG00000223501	chromatin interactions
ENSG00000137802	chromatin interactions
ENSG00000231500	chromatin interactions
ENSG00000188938	chromatin interactions
ENSG00000174171	chromatin interactions
ENSG00000103932	chromatin interactions
ENSG00000203875	chromatin interactions
ENSG00000103966	chromatin interactions
ENSG00000260814	chromatin interactions
ENSG00000174197	chromatin interactions
ENSG00000243789	chromatin interactions
ENSG00000264850	chromatin interactions
ENSG00000272003	chromatin interactions
ENSG00000092445	chromatin interactions
ENSG00000250379	chromatin interactions

Extended variants
information (count: 4967 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:4967 , 50 per page) page: 1 2 3 4 5 6 7 ... 100

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs556835012	chr15:42098923-42098924	Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
2	rs377506239	chr15:42098967-42098968	Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
3	rs573792458	chr15:42098985-42098986	Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
4	rs146653534	chr15:42099011-42099012	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
5	rs559420475	chr15:42099030-42099031	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
6	rs7174099	chr15:42099059-42099060	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs544590044	chr15:42099094-42099095	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
8	rs564578004	chr15:42099097-42099098	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
9	rs541083811	chr15:42099105-42099106	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
10	rs56058296	chr15:42099121-42099122	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
11	rs374597162	chr15:42099164-42099165	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
12	rs551259924	chr15:42099191-42099192	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
13	rs377693349	chr15:42099237-42099238	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
14	rs561283850	chr15:42099270-42099271	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
15	rs370380608	chr15:42099313-42099314	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs145561312	chr15:42099369-42099370	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs141687046	chr15:42099419-42099420	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs192091563	chr15:42099423-42099424	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs566948075	chr15:42099445-42099446	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs184851709	chr15:42099506-42099507	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs552604068	chr15:42099514-42099515	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs190680603	chr15:42099549-42099550	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs536909937	chr15:42099675-42099676	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs557240006	chr15:42099688-42099689	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs567117853	chr15:42099784-42099785	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs567321313	chr15:42099818-42099819	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs536425257	chr15:42099843-42099844	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs193010647	chr15:42099854-42099855	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs184570889	chr15:42099886-42099887	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs116368989	chr15:42099906-42099907	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs558083097	chr15:42099954-42099955	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs189036665	chr15:42099964-42099965	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs544541586	chr15:42100101-42100102	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs561645621	chr15:42100108-42100109	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs544075160	chr15:42100143-42100144	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs537833482	chr15:42100161-42100162	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs374960620	chr15:42100194-42100195	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs557542190	chr15:42100236-42100237	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs549832958	chr15:42100253-42100254	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs532605141	chr15:42100256-42100257	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs552717304	chr15:42100269-42100270	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs370612785	chr15:42100303-42100304	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs574057989	chr15:42100304-42100305	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs199869326	chr15:42100306-42100307	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs138165134	chr15:42100307-42100308	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs367652090	chr15:42100356-42100357	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs531753605	chr15:42100365-42100366	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs2925340	chr15:42100388-42100389	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs374739349	chr15:42100391-42100392	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs567536729	chr15:42100430-42100431	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
HDAC8	0	CNVD
NIPBL	0	CNVD
RAD21	0	CNVD
SMC1A	0	CNVD
SMC3	0	CNVD
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Angelman syndrome	16183798	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21785460	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Basal cell lymphoma	17053054	CNVD
Cancer	20164920	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Cancer	21129771	CNVD
Papillary thyroid carcinoma	22161024	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	21045282	CNVD
Breast cancer	22032731	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Multiple myeloma	16616336	CNVD
Renal cell carcinoma	18765545	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Myelofibrosis	22110671	CNVD
Maculopathy	20981449	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:3189 , 50 per page) page: 1 2 3 4 5 6 7 ... 64

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42070200-42109800	Weak transcription	Fetal Brain Male	brain
2	chr15:42083600-42104600	Weak transcription	Liver	Liver
3	chr15:42083600-42109200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:42083800-42103200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr15:42083800-42103400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr15:42083800-42104400	Weak transcription	Colonic Mucosa	Colon
7	chr15:42083800-42105000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr15:42083800-42119400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:42088600-42103000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr15:42089400-42114800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr15:42090000-42109800	Weak transcription	Small Intestine	intestine
12	chr15:42090600-42101600	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr15:42091400-42105400	Weak transcription	HSMMtube	muscle
14	chr15:42091800-42101200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr15:42092000-42101600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr15:42092200-42099400	Strong transcription	Fetal Intestine Small	intestine
17	chr15:42092200-42109400	Weak transcription	HepG2	liver
18	chr15:42093200-42101600	Weak transcription	Ovary	ovary
19	chr15:42093200-42104800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr15:42093400-42104000	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr15:42093600-42099200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr15:42093600-42100000	Enhancers	HMEC	breast
23	chr15:42093600-42101800	Weak transcription	Adipose Nuclei	Adipose
24	chr15:42093600-42103200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr15:42093600-42103400	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr15:42093600-42104200	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr15:42093600-42104200	Weak transcription	Dnd41	blood
28	chr15:42093600-42105200	Weak transcription	Brain Germinal Matrix	brain
29	chr15:42093800-42101400	Weak transcription	HSMM	muscle
30	chr15:42093800-42103400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr15:42094200-42101600	Weak transcription	Primary B cells from peripheral blood	blood
32	chr15:42094200-42102000	Weak transcription	Primary B cells from cord blood	blood
33	chr15:42094200-42104400	Weak transcription	Fetal Lung	lung
34	chr15:42094200-42104600	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr15:42094600-42101400	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr15:42094600-42101400	Weak transcription	NH-A	brain
37	chr15:42094600-42104400	Weak transcription	Fetal Brain Female	brain
38	chr15:42094800-42103200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr15:42095000-42101000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr15:42095000-42101200	Weak transcription	Osteobl	bone
41	chr15:42095200-42101200	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr15:42095200-42104400	Weak transcription	GM12878-XiMat	blood
43	chr15:42096400-42099000	Enhancers	Duodenum Smooth Muscle	Duodenum
44	chr15:42096400-42099000	Enhancers	Rectal Smooth Muscle	rectum
45	chr15:42096400-42099200	Enhancers	Colon Smooth Muscle	Colon
46	chr15:42096400-42099200	Enhancers	Fetal Thymus	thymus
47	chr15:42096400-42099200	Enhancers	Placenta Amnion	Placenta Amnion
48	chr15:42096400-42099200	Strong transcription	Spleen	Spleen
49	chr15:42096400-42099400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr15:42096600-42099000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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