The 2.0 version of rSNPBase

Variant report

Variant rs549832958
Chromosome Location chr15:42100253-42100254
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:116 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:42070200-42109800 Weak transcription Fetal Brain Male brain
2 chr15:42083600-42104600 Weak transcription Liver Liver
3 chr15:42083600-42109200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr15:42083800-42103200 Weak transcription Primary T helper naive cells from peripheral blood blood
5 chr15:42083800-42103400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
6 chr15:42083800-42104400 Weak transcription Colonic Mucosa Colon
7 chr15:42083800-42105000 Weak transcription Rectal Mucosa Donor 31 rectum
8 chr15:42083800-42119400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
9 chr15:42088600-42103000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
10 chr15:42089400-42114800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
11 chr15:42090000-42109800 Weak transcription Small Intestine intestine
12 chr15:42090600-42101600 Weak transcription Primary neutrophils fromperipheralblood blood
13 chr15:42091400-42105400 Weak transcription HSMMtube muscle
14 chr15:42091800-42101200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
15 chr15:42092000-42101600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
16 chr15:42092200-42109400 Weak transcription HepG2 liver
17 chr15:42093200-42101600 Weak transcription Ovary ovary
18 chr15:42093200-42104800 Weak transcription Sigmoid Colon Sigmoid Colon
19 chr15:42093400-42104000 Weak transcription Cortex derived primary cultured neurospheres brain
20 chr15:42093600-42101800 Weak transcription Adipose Nuclei Adipose
21 chr15:42093600-42103200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
22 chr15:42093600-42103400 Weak transcription Skeletal Muscle Female skeletal muscle
23 chr15:42093600-42104200 Weak transcription Rectal Mucosa Donor 29 rectum
24 chr15:42093600-42104200 Weak transcription Dnd41 blood
25 chr15:42093600-42105200 Weak transcription Brain Germinal Matrix brain
26 chr15:42093800-42101400 Weak transcription HSMM muscle
27 chr15:42093800-42103400 Weak transcription Primary T regulatory cells fromperipheralblood blood
28 chr15:42094200-42101600 Weak transcription Primary B cells from peripheral blood blood
29 chr15:42094200-42102000 Weak transcription Primary B cells from cord blood blood
30 chr15:42094200-42104400 Weak transcription Fetal Lung lung
31 chr15:42094200-42104600 Weak transcription Monocytes-CD14+_RO01746 blood
32 chr15:42094600-42101400 Weak transcription Primary monocytes fromperipheralblood blood
33 chr15:42094600-42101400 Weak transcription NH-A brain
34 chr15:42094600-42104400 Weak transcription Fetal Brain Female brain
35 chr15:42094800-42103200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
36 chr15:42095000-42101000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
37 chr15:42095000-42101200 Weak transcription Osteobl bone
38 chr15:42095200-42101200 Weak transcription Muscle Satellite Cultured Cells --
39 chr15:42095200-42104400 Weak transcription GM12878-XiMat blood
40 chr15:42097000-42101800 Weak transcription Primary T cells fromperipheralblood blood
41 chr15:42097000-42103400 Weak transcription Skeletal Muscle Male skeletal muscle
42 chr15:42097000-42104200 Weak transcription Aorta Aorta
43 chr15:42097000-42104800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
44 chr15:42097200-42111000 Weak transcription Fetal Kidney kidney
45 chr15:42097400-42103000 Weak transcription Primary T helper cells fromperipheralblood blood
46 chr15:42097400-42103400 Weak transcription Primary T helper cells PMA-I stimulated --
47 chr15:42097600-42101800 Weak transcription Primary T killer naive cells fromperipheralblood blood
48 chr15:42097600-42103400 Weak transcription Primary T helper naive cells fromperipheralblood blood
49 chr15:42097600-42103600 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
50 chr15:42097600-42104200 Weak transcription Thymus Thymus

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Last update: Aug 31, 2015