Variant report

Variant	nsv1038822
Chromosome Location	chr10:116455647-116497204
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:23)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:23 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:116455556..116457603-chr10:116458669..116461297,2	MCF-7	breast:
2	chr10:116310252..116311787-chr10:116463124..116463956,6	MCF-7	breast:
3	chr10:116465161..116467444-chr10:116472973..116474517,2	MCF-7	breast:
4	chr10:116310194..116311025-chr10:116463074..116463657,3	MCF-7	breast:
5	chr10:116463984..116465623-chr10:116473581..116476078,2	MCF-7	breast:
6	chr10:116483992..116485637-chr10:116525925..116527534,2	MCF-7	breast:
7	chr10:116484261..116485769-chr10:116537705..116539311,2	MCF-7	breast:
8	chr10:116469822..116472730-chr10:116527178..116529089,2	MCF-7	breast:
9	chr10:116481771..116484398-chr10:116487848..116490311,3	MCF-7	breast:
10	chr10:116485011..116486962-chr10:116487146..116489328,2	MCF-7	breast:
11	chr10:116475010..116479006-chr10:116480936..116484073,4	MCF-7	breast:
12	chr10:116473831..116475798-chr10:116484185..116486243,2	MCF-7	breast:
13	chr10:116475010..116479006-chr10:116480936..116484073,4	MCF-7	breast:
14	chr10:116471677..116474486-chr10:116483195..116484709,2	MCF-7	breast:
15	chr10:116485011..116486962-chr10:116487146..116489328,2	MCF-7	breast:
16	chr10:116455556..116457603-chr10:116458669..116461297,2	MCF-7	breast:
17	chr10:116463984..116465623-chr10:116473581..116476078,2	MCF-7	breast:
18	chr10:116481771..116484398-chr10:116487848..116490311,3	MCF-7	breast:
19	chr10:116471677..116474486-chr10:116483195..116484709,2	MCF-7	breast:
20	chr10:116459513..116462179-chr10:116581003..116583995,3	MCF-7	breast:
21	chr10:116463343..116464122-chr10:116545816..116546627,2	MCF-7	breast:
22	chr10:116473831..116475798-chr10:116484185..116486243,2	MCF-7	breast:
23	chr10:116465161..116467444-chr10:116472973..116474517,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000151553	chromatin interactions

Extended variants
information (count: 1542 )
Associated
traits (count: 67 )

Variant overlapped rSNPs/rCNVs (count:1542 , 50 per page) page: 1 2 3 4 5 6 7 ... 31

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs531013260	chr10:116455648-116455649	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs575599898	chr10:116455666-116455667	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs185027987	chr10:116455672-116455673	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs570817911	chr10:116455691-116455692	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs527577489	chr10:116455741-116455742	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs546890794	chr10:116455768-116455769	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs552401206	chr10:116455838-116455839	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs148219825	chr10:116455862-116455863	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs557501482	chr10:116455887-116455888	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs568884243	chr10:116455912-116455913	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs539501800	chr10:116455934-116455935	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs570619839	chr10:116455994-116455995	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs572870911	chr10:116455998-116455999	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs533730394	chr10:116456070-116456071	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs117961568	chr10:116456078-116456079	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs61669564	chr10:116456096-116456097	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs188230272	chr10:116456118-116456119	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs562688510	chr10:116456161-116456162	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs575690721	chr10:116456164-116456165	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs377395235	chr10:116456205-116456206	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs531858019	chr10:116456206-116456207	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs140238863	chr10:116456213-116456214	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs546555667	chr10:116456289-116456290	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs199874384	chr10:116456296-116456297	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs34706096	chr10:116456299-116456300	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs547862519	chr10:116456335-116456336	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs181049879	chr10:116456358-116456359	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs546344295	chr10:116456360-116456361	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs529519232	chr10:116456361-116456362	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs550924549	chr10:116456371-116456372	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs569422581	chr10:116456447-116456448	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs539203451	chr10:116456450-116456451	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs551466903	chr10:116456474-116456475	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs78996613	chr10:116456501-116456502	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs150452046	chr10:116456504-116456505	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs189396002	chr10:116456581-116456582	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs528813364	chr10:116456632-116456633	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs73371871	chr10:116456646-116456647	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs538134512	chr10:116456665-116456666	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs550159909	chr10:116456666-116456667	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs113617825	chr10:116456688-116456689	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs577771512	chr10:116456753-116456754	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs74791985	chr10:116456816-116456817	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs138438228	chr10:116456818-116456819	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs143035591	chr10:116456835-116456836	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs11196884	chr10:116456843-116456844	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs34210195	chr10:116456915-116456916	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs577895502	chr10:116456926-116456927	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
49	rs566915401	chr10:116456939-116456940	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
50	rs529581339	chr10:116456953-116456954	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:67)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Paraganglioma	17535989	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	16573809	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	16608533	CNVD
small cell lung cancer	20016488	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Cornelia de Lange syndrome	24599119	CNVD
T-cell lymphomas	19863542	CNVD
Breast cancer	16397240	CNVD
Urothelial carcinoma	21177765	CNVD
Chronic lymphocytic leukemia	18645599	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Hepatocellular carcinoma	16750200	CNVD
Barrett''s syndrome	19417022	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Neuroticism	17667963	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Myxofibrosarcoma	16751306	CNVD
Breast cancer	17133270	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:732 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116444400-116457200	Weak transcription	Esophagus	oesophagus
2	chr10:116445600-116455800	Weak transcription	Right Ventricle	heart
3	chr10:116446000-116459200	Weak transcription	Fetal Intestine Small	intestine
4	chr10:116446200-116456600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:116448400-116455800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr10:116451200-116464600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr10:116451800-116456000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr10:116451800-116456600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:116451800-116456600	Weak transcription	NHEK	skin
10	chr10:116451800-116456800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:116452000-116456800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:116452000-116456800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr10:116452000-116456800	Weak transcription	NH-A	brain
14	chr10:116452200-116456000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr10:116452200-116456000	Weak transcription	HMEC	breast
16	chr10:116452200-116456600	Weak transcription	Hela-S3	cervix
17	chr10:116452200-116456800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:116453000-116457200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr10:116453800-116457600	Enhancers	Fetal Heart	heart
20	chr10:116454200-116456600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:116454200-116456800	Weak transcription	Right Atrium	heart
22	chr10:116454400-116456000	Weak transcription	HSMM	muscle
23	chr10:116454400-116456200	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr10:116454400-116456600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:116454600-116456800	Weak transcription	A549	lung
26	chr10:116454800-116456400	Weak transcription	HUVEC	blood vessel
27	chr10:116454800-116456600	Weak transcription	HSMMtube	muscle
28	chr10:116454800-116456800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr10:116455000-116456000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:116455000-116457400	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr10:116455600-116455800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr10:116455600-116457400	Enhancers	Adipose Nuclei	Adipose
33	chr10:116455600-116457400	Enhancers	Left Ventricle	heart
34	chr10:116455800-116456400	Enhancers	Right Ventricle	heart
35	chr10:116455800-116457000	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr10:116455800-116457400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr10:116455800-116457400	Enhancers	Psoas Muscle	Psoas
38	chr10:116456000-116456200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr10:116456000-116456800	Enhancers	HMEC	breast
40	chr10:116456000-116456800	Enhancers	HSMM	muscle
41	chr10:116456000-116457000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr10:116456000-116457600	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr10:116456200-116456600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr10:116456200-116456800	Enhancers	Muscle Satellite Cultured Cells	--
45	chr10:116456400-116456800	Weak transcription	Right Ventricle	heart
46	chr10:116456400-116456800	Enhancers	HUVEC	blood vessel
47	chr10:116456600-116456800	Enhancers	Hela-S3	cervix
48	chr10:116456600-116456800	Enhancers	HSMMtube	muscle
49	chr10:116456600-116457000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr10:116456600-116457000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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