Variant report

Variant	rs529581339
Chromosome Location	chr10:116456953-116456954
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116455556..116457603-chr10:116458669..116461297,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv1042170	chr10:116455043-116504871	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1046888	chr10:116455043-116505640	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1038822	chr10:116455647-116497204	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116444400-116457200	Weak transcription	Esophagus	oesophagus
2	chr10:116446000-116459200	Weak transcription	Fetal Intestine Small	intestine
3	chr10:116451200-116464600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:116453000-116457200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr10:116453800-116457600	Enhancers	Fetal Heart	heart
6	chr10:116455000-116457400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr10:116455600-116457400	Enhancers	Adipose Nuclei	Adipose
8	chr10:116455600-116457400	Enhancers	Left Ventricle	heart
9	chr10:116455800-116457000	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr10:116455800-116457400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:116455800-116457400	Enhancers	Psoas Muscle	Psoas
12	chr10:116456000-116457000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:116456000-116457600	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr10:116456600-116457000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:116456600-116457000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:116456600-116457400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:116456600-116457400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:116456600-116457400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr10:116456600-116457400	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr10:116456600-116457400	Enhancers	Rectal Smooth Muscle	rectum
21	chr10:116456600-116457400	Enhancers	NHEK	skin
22	chr10:116456600-116457400	Enhancers	Osteobl	bone
23	chr10:116456600-116457600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr10:116456600-116458200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:116456800-116457000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
26	chr10:116456800-116457000	Flanking Active TSS	HMEC	breast
27	chr10:116456800-116457200	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr10:116456800-116457200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr10:116456800-116457200	Enhancers	Right Atrium	heart
30	chr10:116456800-116457200	Flanking Active TSS	HSMMtube	muscle
31	chr10:116456800-116457400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr10:116456800-116457400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr10:116456800-116457400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr10:116456800-116457400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr10:116456800-116457400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr10:116456800-116457400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr10:116456800-116457400	Enhancers	Colon Smooth Muscle	Colon
38	chr10:116456800-116457400	Enhancers	Lung	lung
39	chr10:116456800-116457400	Enhancers	Placenta Amnion	Placenta Amnion
40	chr10:116456800-116457400	Enhancers	Right Ventricle	heart
41	chr10:116456800-116457400	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr10:116456800-116457400	Enhancers	A549	lung
43	chr10:116456800-116457400	Flanking Active TSS	Hela-S3	cervix
44	chr10:116456800-116457400	Flanking Active TSS	HSMM	muscle
45	chr10:116456800-116457400	Flanking Active TSS	HUVEC	blood vessel
46	chr10:116456800-116457600	Enhancers	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links