Variant report

Variant	nsv1042615
Chromosome Location	chr10:96855366-96869094
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 110 )
Associated
traits (count: 71 )

Variant overlapped rSNPs/rCNVs (count:110 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs74150772	chr10:96855666-96855667	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs576485707	chr10:96855667-96855668	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs539232336	chr10:96855669-96855670	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs541808295	chr10:96855714-96855715	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs188911691	chr10:96855737-96855738	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs572692652	chr10:96855817-96855818	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs530838301	chr10:96855850-96855851	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs541399371	chr10:96855857-96855858	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs572598593	chr10:96855918-96855919	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs372752155	chr10:96855930-96855931	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs10786186	chr10:96855958-96855959	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs149763407	chr10:96855986-96855987	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs533516387	chr10:96855989-96855990	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs574901894	chr10:96856004-96856005	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs10786187	chr10:96856010-96856011	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs74715140	chr10:96856015-96856016	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs10786188	chr10:96856022-96856023	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
18	rs546267198	chr10:96856039-96856040	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs559329823	chr10:96856071-96856072	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs548996839	chr10:96856078-96856079	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs192527244	chr10:96856079-96856080	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs145719773	chr10:96856088-96856089	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs148948933	chr10:96856142-96856143	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs185571329	chr10:96856145-96856146	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs11188179	chr10:96856172-96856173	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs59277980	chr10:96856221-96856222	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs189230195	chr10:96856250-96856251	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs539205745	chr10:96856286-96856287	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs553012302	chr10:96856311-96856312	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs367576569	chr10:96856335-96856336	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs181026318	chr10:96856439-96856440	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs185860116	chr10:96856453-96856454	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs555322699	chr10:96856463-96856464	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs528100316	chr10:96856483-96856484	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs575139514	chr10:96856499-96856500	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs551341313	chr10:96856500-96856501	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs571541734	chr10:96856519-96856520	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs536817884	chr10:96856551-96856552	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs543845713	chr10:96856552-96856553	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs78967886	chr10:96856569-96856570	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs2094294	chr10:96856611-96856612	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs752415	chr10:96856628-96856629	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs188722433	chr10:96856639-96856640	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs555720708	chr10:96856650-96856651	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs377024819	chr10:96856681-96856682	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs752416	chr10:96856685-96856686	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs752417	chr10:96856695-96856696	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs561660051	chr10:96856698-96856699	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs181153573	chr10:96856726-96856727	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs550460816	chr10:96856752-96856753	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:71)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Intracranial aneurysm	16715129	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Ovarian clear cell carcinoma	21343371	CNVD

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96855600-96856000	Enhancers	Gastric	stomach
2	chr10:96855800-96856400	Enhancers	Fetal Intestine Large	intestine
3	chr10:96855800-96856400	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr10:96856000-96856200	Enhancers	Fetal Intestine Small	intestine
5	chr10:96856000-96856800	Enhancers	Stomach Mucosa	stomach
6	chr10:96856000-96858200	Enhancers	HepG2	liver
7	chr10:96856200-96857200	Weak transcription	Fetal Intestine Small	intestine
8	chr10:96856400-96857400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr10:96856400-96857600	Weak transcription	Fetal Intestine Large	intestine
10	chr10:96856800-96857200	Weak transcription	Stomach Mucosa	stomach
11	chr10:96857200-96858000	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr10:96857200-96858200	Enhancers	Fetal Intestine Small	intestine
13	chr10:96857200-96858200	Enhancers	Stomach Mucosa	stomach
14	chr10:96857400-96858000	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr10:96857400-96858200	Enhancers	Liver	Liver
16	chr10:96857600-96857800	Enhancers	Gastric	stomach
17	chr10:96857600-96858200	Enhancers	Fetal Intestine Large	intestine
18	chr10:96869000-96871600	Enhancers	HepG2	liver

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