Variant report

Variant	rs59277980
Chromosome Location	chr10:96856221-96856222
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs1032097	1.00[EUR][1000 genomes]
rs1032098	1.00[EUR][1000 genomes]
rs11572073	1.00[EUR][1000 genomes]
rs11572081	1.00[EUR][1000 genomes]
rs11572089	1.00[EUR][1000 genomes]
rs11572132	1.00[EUR][1000 genomes]
rs11572145	1.00[EUR][1000 genomes]
rs11572148	1.00[EUR][1000 genomes]
rs11572176	1.00[EUR][1000 genomes]
rs11812764	1.00[EUR][1000 genomes]
rs11813834	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11814600	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11815378	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11816316	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11816732	1.00[EUR][1000 genomes]
rs11817176	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11817388	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11818420	1.00[AMR][1000 genomes]
rs11818486	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11819238	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2094293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2094294	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2860950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2860951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45454292	1.00[EUR][1000 genomes]
rs45487391	1.00[EUR][1000 genomes]
rs45491002	1.00[EUR][1000 genomes]
rs45495404	1.00[EUR][1000 genomes]
rs45620737	1.00[EUR][1000 genomes]
rs55700247	1.00[EUR][1000 genomes]
rs55740007	1.00[EUR][1000 genomes]
rs55786415	1.00[EUR][1000 genomes]
rs55915838	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55937167	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56094588	1.00[EUR][1000 genomes]
rs56187632	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56264187	1.00[EUR][1000 genomes]
rs56412102	1.00[EUR][1000 genomes]
rs56979418	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56999073	1.00[EUR][1000 genomes]
rs58894719	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59282006	1.00[EUR][1000 genomes]
rs59329992	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59485845	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59533405	1.00[EUR][1000 genomes]
rs60480656	1.00[EUR][1000 genomes]
rs60916665	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61478963	1.00[EUR][1000 genomes]
rs61634481	1.00[EUR][1000 genomes]
rs6583982	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6583986	1.00[EUR][1000 genomes]
rs7070484	1.00[EUR][1000 genomes]
rs7074994	1.00[EUR][1000 genomes]
rs7078505	1.00[EUR][1000 genomes]
rs7083576	1.00[EUR][1000 genomes]
rs7083837	1.00[EUR][1000 genomes]
rs7084045	1.00[EUR][1000 genomes]
rs7085646	1.00[EUR][1000 genomes]
rs7087494	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7088962	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7090248	1.00[EUR][1000 genomes]
rs7090669	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7090961	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7091711	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7093626	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7100479	1.00[EUR][1000 genomes]
rs74150750	1.00[EUR][1000 genomes]
rs74150764	1.00[EUR][1000 genomes]
rs74150766	1.00[EUR][1000 genomes]
rs74150767	1.00[EUR][1000 genomes]
rs74150768	1.00[EUR][1000 genomes]
rs74150772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150780	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150781	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150782	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150785	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150786	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150790	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150792	1.00[EUR][1000 genomes]
rs74150793	1.00[EUR][1000 genomes]
rs74150795	1.00[EUR][1000 genomes]
rs7894207	1.00[EUR][1000 genomes]
rs7915255	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7918727	1.00[EUR][1000 genomes]
rs7918803	1.00[EUR][1000 genomes]
rs7919415	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv467436	chr10:96805371-96862286	Genic enhancers Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
4	nsv551964	chr10:96805371-96862286	ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
5	esv1847869	chr10:96848203-96864595	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	nsv1043332	chr10:96851448-96865289	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
7	nsv1040153	chr10:96851448-96869051	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	nsv1041915	chr10:96851448-96869694	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	nsv1048003	chr10:96853813-96865289	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	nsv1042615	chr10:96855366-96869094	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
11	nsv1043378	chr10:96855366-96876009	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
12	esv21432	chr10:96856006-96996043	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96855800-96856400	Enhancers	Fetal Intestine Large	intestine
2	chr10:96855800-96856400	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr10:96856000-96856800	Enhancers	Stomach Mucosa	stomach
4	chr10:96856000-96858200	Enhancers	HepG2	liver
5	chr10:96856200-96857200	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links