Variant report

Variant	rs45491002
Chromosome Location	chr10:97047961-97047962
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:97040785..97042356-chr10:97046596..97048726,2	MCF-7	breast:
2	chr10:97047892..97049981-chr10:97088478..97090933,2	MCF-7	breast:
3	chr10:96989099..96991002-chr10:97047738..97051859,4	MCF-7	breast:
4	chr10:97046965..97049082-chr10:97066729..97068931,2	K562	blood:
5	chr10:97002381..97008883-chr10:97045266..97052392,13	MCF-7	breast:
6	chr10:97038762..97040943-chr10:97046826..97048982,3	MCF-7	breast:
7	chr10:97034466..97036166-chr10:97046747..97048932,2	K562	blood:
8	chr10:97030116..97038568-chr10:97046190..97052064,12	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000107438	Chromatin interaction
ENSG00000234026	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1032097	1.00[EUR][1000 genomes]
rs1032098	1.00[EUR][1000 genomes]
rs11812764	1.00[EUR][1000 genomes]
rs11813834	1.00[EUR][1000 genomes]
rs11814600	1.00[EUR][1000 genomes]
rs11815378	1.00[EUR][1000 genomes]
rs11816316	1.00[EUR][1000 genomes]
rs11816732	1.00[EUR][1000 genomes]
rs11817176	1.00[EUR][1000 genomes]
rs11817388	1.00[EUR][1000 genomes]
rs11818486	1.00[EUR][1000 genomes]
rs11819238	1.00[EUR][1000 genomes]
rs2094293	1.00[EUR][1000 genomes]
rs2094294	1.00[EUR][1000 genomes]
rs2860950	1.00[EUR][1000 genomes]
rs2860951	1.00[EUR][1000 genomes]
rs45454292	1.00[EUR][1000 genomes]
rs45487391	1.00[EUR][1000 genomes]
rs45495404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45620737	1.00[EUR][1000 genomes]
rs55740007	1.00[EUR][1000 genomes]
rs55786415	1.00[EUR][1000 genomes]
rs55915838	1.00[EUR][1000 genomes]
rs55937167	1.00[EUR][1000 genomes]
rs56094588	1.00[EUR][1000 genomes]
rs56187632	1.00[EUR][1000 genomes]
rs56264187	1.00[EUR][1000 genomes]
rs56979418	1.00[EUR][1000 genomes]
rs56999073	1.00[EUR][1000 genomes]
rs58512406	1.00[EUR][1000 genomes]
rs58759119	1.00[EUR][1000 genomes]
rs58894719	1.00[EUR][1000 genomes]
rs59277980	1.00[EUR][1000 genomes]
rs59282006	1.00[EUR][1000 genomes]
rs59329992	1.00[EUR][1000 genomes]
rs59485845	1.00[EUR][1000 genomes]
rs60480656	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60916665	1.00[EUR][1000 genomes]
rs61102040	1.00[EUR][1000 genomes]
rs61478963	1.00[EUR][1000 genomes]
rs61634481	1.00[EUR][1000 genomes]
rs6583982	1.00[EUR][1000 genomes]
rs6583986	1.00[EUR][1000 genomes]
rs7070484	1.00[EUR][1000 genomes]
rs7074994	1.00[EUR][1000 genomes]
rs7085646	1.00[EUR][1000 genomes]
rs7087494	1.00[EUR][1000 genomes]
rs7088962	1.00[EUR][1000 genomes]
rs7090248	1.00[EUR][1000 genomes]
rs7090669	1.00[EUR][1000 genomes]
rs7090961	1.00[EUR][1000 genomes]
rs7091711	1.00[EUR][1000 genomes]
rs7093626	1.00[EUR][1000 genomes]
rs7100479	1.00[EUR][1000 genomes]
rs74150764	1.00[EUR][1000 genomes]
rs74150766	1.00[EUR][1000 genomes]
rs74150767	1.00[EUR][1000 genomes]
rs74150768	1.00[EUR][1000 genomes]
rs74150772	1.00[EUR][1000 genomes]
rs74150780	1.00[EUR][1000 genomes]
rs74150781	1.00[EUR][1000 genomes]
rs74150782	1.00[EUR][1000 genomes]
rs74150785	1.00[EUR][1000 genomes]
rs74150786	1.00[EUR][1000 genomes]
rs74150790	1.00[EUR][1000 genomes]
rs74150792	1.00[EUR][1000 genomes]
rs74150793	1.00[EUR][1000 genomes]
rs74150795	1.00[EUR][1000 genomes]
rs7894207	1.00[EUR][1000 genomes]
rs7910365	1.00[EUR][1000 genomes]
rs7912439	1.00[EUR][1000 genomes]
rs7915255	1.00[EUR][1000 genomes]
rs7918727	1.00[EUR][1000 genomes]
rs7918803	1.00[EUR][1000 genomes]
rs7919415	1.00[EUR][1000 genomes]
rs7923670	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97024800-97049400	Weak transcription	Fetal Kidney	kidney
2	chr10:97038600-97048800	Weak transcription	Fetal Thymus	thymus
3	chr10:97038600-97049000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:97038800-97048800	Weak transcription	HSMMtube	muscle
5	chr10:97041400-97049000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:97042000-97048600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:97043800-97048000	Enhancers	HepG2	liver
8	chr10:97044200-97048000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:97044600-97048200	Enhancers	Stomach Mucosa	stomach
10	chr10:97044800-97049000	Enhancers	H1 Cell Line	embryonic stem cell
11	chr10:97045200-97048200	Weak transcription	Pancreas	Pancrea
12	chr10:97045400-97049200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:97045600-97049000	Weak transcription	Colon Smooth Muscle	Colon
14	chr10:97046200-97048200	Enhancers	Small Intestine	intestine
15	chr10:97046200-97048600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:97046400-97048200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr10:97046400-97048800	Enhancers	NHDF-Ad	bronchial
18	chr10:97046400-97049200	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:97046600-97048400	Enhancers	Primary T cells from cord blood	blood
20	chr10:97046600-97048400	Flanking Active TSS	Duodenum Mucosa	Duodenum
21	chr10:97046600-97048800	Enhancers	Liver	Liver
22	chr10:97046600-97048800	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr10:97046600-97048800	Enhancers	A549	lung
24	chr10:97046600-97049000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr10:97046800-97048000	Enhancers	Fetal Intestine Small	intestine
26	chr10:97046800-97049000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr10:97046800-97049000	Weak transcription	Gastric	stomach
28	chr10:97046800-97049400	Enhancers	HUVEC	blood vessel
29	chr10:97047000-97048000	Enhancers	Osteobl	bone
30	chr10:97047000-97048200	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr10:97047000-97048200	Enhancers	NHLF	lung
32	chr10:97047000-97049000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr10:97047000-97049000	Weak transcription	Esophagus	oesophagus
34	chr10:97047000-97049000	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr10:97047000-97049000	Weak transcription	HSMM	muscle
36	chr10:97047000-97049200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr10:97047000-97049200	Active TSS	Duodenum Smooth Muscle	Duodenum
38	chr10:97047000-97049400	Enhancers	Primary B cells from peripheral blood	blood
39	chr10:97047000-97051000	Active TSS	Right Atrium	heart
40	chr10:97047200-97048000	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr10:97047200-97048400	Weak transcription	Colonic Mucosa	Colon
42	chr10:97047200-97048600	Transcr. at gene 5' and 3'	NHEK	skin
43	chr10:97047200-97049200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr10:97047400-97048000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr10:97047400-97048000	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr10:97047400-97048200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr10:97047400-97048200	Weak transcription	Left Ventricle	heart
48	chr10:97047400-97048200	Weak transcription	Lung	lung
49	chr10:97047400-97048400	Weak transcription	NH-A	brain
50	chr10:97047400-97048600	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin

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