Variant report

Variant	rs61102040
Chromosome Location	chr10:97224596-97224597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97220624..97225860-chr10:97227541..97231131,6	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs45454292	1.00[EUR][1000 genomes]
rs45487391	1.00[EUR][1000 genomes]
rs45491002	1.00[EUR][1000 genomes]
rs45495404	1.00[EUR][1000 genomes]
rs45620737	1.00[EUR][1000 genomes]
rs58512406	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58759119	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59282006	1.00[EUR][1000 genomes]
rs60480656	1.00[EUR][1000 genomes]
rs7910365	1.00[EUR][1000 genomes]
rs7912439	1.00[EUR][1000 genomes]
rs7923670	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045002	chr10:97214418-97250630	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97213200-97234200	Weak transcription	Colonic Mucosa	Colon
2	chr10:97216000-97226800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr10:97216000-97228200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr10:97218000-97229600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:97219600-97225800	Weak transcription	Brain Germinal Matrix	brain
6	chr10:97219800-97229600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:97220600-97232000	Enhancers	Fetal Heart	heart
8	chr10:97220800-97225000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr10:97220800-97225000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr10:97221600-97226200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:97221800-97226200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr10:97221800-97226200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:97222000-97224800	Enhancers	Liver	Liver
14	chr10:97222200-97225000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:97222400-97224800	Enhancers	Brain Hippocampus Middle	brain
16	chr10:97222400-97225000	Enhancers	Brain Anterior Caudate	brain
17	chr10:97222400-97225000	Enhancers	Fetal Brain Female	brain
18	chr10:97222400-97225000	Enhancers	Right Ventricle	heart
19	chr10:97222400-97225200	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr10:97222600-97224800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr10:97222600-97224800	Enhancers	Fetal Muscle Leg	muscle
22	chr10:97222600-97224800	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr10:97222800-97224800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr10:97222800-97224800	Enhancers	Left Ventricle	heart
25	chr10:97222800-97225000	Enhancers	Colon Smooth Muscle	Colon
26	chr10:97222800-97226400	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr10:97223000-97224800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr10:97223000-97224800	Enhancers	Pancreas	Pancrea
29	chr10:97223000-97226400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr10:97223200-97226400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr10:97223200-97227000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr10:97223200-97228000	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr10:97223200-97229600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr10:97223200-97230200	Enhancers	Fetal Brain Male	brain
35	chr10:97223200-97234000	Weak transcription	Ovary	ovary
36	chr10:97223400-97224800	Enhancers	Psoas Muscle	Psoas
37	chr10:97223400-97225000	Enhancers	Fetal Intestine Large	intestine
38	chr10:97223400-97225000	Enhancers	Rectal Mucosa Donor 29	rectum
39	chr10:97223400-97225000	Enhancers	Rectal Mucosa Donor 31	rectum
40	chr10:97223400-97226400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr10:97223600-97225000	Enhancers	Brain Inferior Temporal Lobe	brain
42	chr10:97223600-97226200	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr10:97223600-97226200	Weak transcription	Fetal Lung	lung
44	chr10:97223600-97227000	Weak transcription	Gastric	stomach
45	chr10:97223600-97229200	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr10:97223800-97226400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr10:97223800-97226400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr10:97223800-97226400	Weak transcription	Placenta	Placenta
49	chr10:97223800-97226600	Weak transcription	Fetal Stomach	stomach
50	chr10:97223800-97227000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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