Variant report

Variant	rs59282006
Chromosome Location	chr10:97064060-97064061
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97054091..97056343-chr10:97062077..97064550,2	K562	blood:
2	chr10:97047645..97051954-chr10:97061072..97065962,7	MCF-7	breast:
3	chr10:97063353..97065156-chr10:97068953..97071321,2	MCF-7	breast:
4	chr10:97063446..97065363-chr10:97067014..97069636,2	K562	blood:
5	chr10:97049641..97053849-chr10:97062543..97067097,4	K562	blood:
6	chr10:97063446..97065566-chr10:97068136..97069871,2	K562	blood:

Variant related genes	Relation type
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1032097	1.00[EUR][1000 genomes]
rs1032098	1.00[EUR][1000 genomes]
rs11812764	1.00[EUR][1000 genomes]
rs11813834	1.00[EUR][1000 genomes]
rs11814600	1.00[EUR][1000 genomes]
rs11815378	1.00[EUR][1000 genomes]
rs11816316	1.00[EUR][1000 genomes]
rs11817176	1.00[EUR][1000 genomes]
rs11817388	1.00[EUR][1000 genomes]
rs11818486	1.00[EUR][1000 genomes]
rs11819238	1.00[EUR][1000 genomes]
rs2094293	1.00[EUR][1000 genomes]
rs2094294	1.00[EUR][1000 genomes]
rs2860950	1.00[EUR][1000 genomes]
rs2860951	1.00[EUR][1000 genomes]
rs45454292	1.00[EUR][1000 genomes]
rs45487391	1.00[EUR][1000 genomes]
rs45491002	1.00[EUR][1000 genomes]
rs45495404	1.00[EUR][1000 genomes]
rs45620737	1.00[EUR][1000 genomes]
rs55740007	1.00[EUR][1000 genomes]
rs55786415	1.00[EUR][1000 genomes]
rs55915838	1.00[EUR][1000 genomes]
rs55937167	1.00[EUR][1000 genomes]
rs56094588	1.00[EUR][1000 genomes]
rs56187632	1.00[EUR][1000 genomes]
rs56264187	1.00[EUR][1000 genomes]
rs56979418	1.00[EUR][1000 genomes]
rs56999073	1.00[EUR][1000 genomes]
rs58512406	1.00[EUR][1000 genomes]
rs58759119	1.00[EUR][1000 genomes]
rs58894719	1.00[EUR][1000 genomes]
rs59277980	1.00[EUR][1000 genomes]
rs59329992	1.00[EUR][1000 genomes]
rs59485845	1.00[EUR][1000 genomes]
rs60480656	1.00[EUR][1000 genomes]
rs60916665	1.00[EUR][1000 genomes]
rs61102040	1.00[EUR][1000 genomes]
rs61478963	1.00[EUR][1000 genomes]
rs61634481	1.00[EUR][1000 genomes]
rs6583982	1.00[EUR][1000 genomes]
rs6583986	1.00[EUR][1000 genomes]
rs7070484	1.00[EUR][1000 genomes]
rs7074994	1.00[EUR][1000 genomes]
rs7087494	1.00[EUR][1000 genomes]
rs7088962	1.00[EUR][1000 genomes]
rs7090248	1.00[EUR][1000 genomes]
rs7090669	1.00[EUR][1000 genomes]
rs7090961	1.00[EUR][1000 genomes]
rs7091711	1.00[EUR][1000 genomes]
rs7093626	1.00[EUR][1000 genomes]
rs7100479	1.00[EUR][1000 genomes]
rs74150768	1.00[EUR][1000 genomes]
rs74150772	1.00[EUR][1000 genomes]
rs74150780	1.00[EUR][1000 genomes]
rs74150781	1.00[EUR][1000 genomes]
rs74150782	1.00[EUR][1000 genomes]
rs74150785	1.00[EUR][1000 genomes]
rs74150786	1.00[EUR][1000 genomes]
rs74150790	1.00[EUR][1000 genomes]
rs74150792	1.00[EUR][1000 genomes]
rs74150793	1.00[EUR][1000 genomes]
rs74150795	1.00[EUR][1000 genomes]
rs7894207	1.00[EUR][1000 genomes]
rs7910365	1.00[EUR][1000 genomes]
rs7912439	1.00[EUR][1000 genomes]
rs7915255	1.00[EUR][1000 genomes]
rs7918727	1.00[EUR][1000 genomes]
rs7918803	1.00[EUR][1000 genomes]
rs7919415	1.00[EUR][1000 genomes]
rs7923670	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv552021	chr10:97053404-97071334	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97055600-97072800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:97055800-97067600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:97057600-97070200	Weak transcription	Spleen	Spleen
4	chr10:97057800-97064600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:97058000-97068200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr10:97058200-97067600	Weak transcription	GM12878-XiMat	blood
7	chr10:97062800-97066400	Enhancers	Fetal Heart	heart
8	chr10:97063000-97065200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr10:97063200-97064200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:97063200-97064200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:97063200-97064400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:97063200-97064800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:97063200-97064800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr10:97063200-97064800	Enhancers	Left Ventricle	heart
15	chr10:97063200-97065400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr10:97063400-97064600	Enhancers	Fetal Intestine Small	intestine
17	chr10:97063400-97064800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr10:97063400-97064800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr10:97063400-97064800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:97063400-97064800	Enhancers	Gastric	stomach
21	chr10:97063400-97066000	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr10:97063400-97067600	Enhancers	A549	lung
23	chr10:97063400-97072400	Weak transcription	Fetal Brain Female	brain
24	chr10:97063400-97073600	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr10:97063600-97064800	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr10:97063600-97065200	Enhancers	Stomach Mucosa	stomach
27	chr10:97063600-97066000	Enhancers	Fetal Intestine Large	intestine
28	chr10:97063600-97066000	Enhancers	HepG2	liver
29	chr10:97063600-97067000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr10:97063600-97067600	Weak transcription	Pancreas	Pancrea
31	chr10:97063600-97068400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr10:97063600-97068800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr10:97063600-97070400	Weak transcription	Lung	lung
34	chr10:97063800-97064600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
35	chr10:97063800-97064600	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr10:97063800-97064800	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr10:97064000-97064200	Enhancers	H1 Cell Line	embryonic stem cell
38	chr10:97064000-97064200	Enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr10:97064000-97064600	Enhancers	Duodenum Mucosa	Duodenum
40	chr10:97064000-97064600	Enhancers	Rectal Mucosa Donor 29	rectum
41	chr10:97064000-97064800	Enhancers	H9 Cell Line	embryonic stem cell
42	chr10:97064000-97064800	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr10:97064000-97064800	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr10:97064000-97065400	Enhancers	Small Intestine	intestine
45	chr10:97064000-97067000	Weak transcription	NH-A	brain
46	chr10:97064000-97067600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr10:97064000-97067600	Weak transcription	Right Atrium	heart
48	chr10:97064000-97067600	Weak transcription	HMEC	breast
49	chr10:97064000-97068400	Enhancers	K562	blood
50	chr10:97064000-97073200	Weak transcription	Fetal Muscle Leg	muscle

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