Variant report

Variant	rs74150790
Chromosome Location	chr10:96951903-96951904
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96951132..96952713-chr10:96952994..96955144,2	K562	blood:
2	chr10:96944739..96947695-chr10:96950554..96953637,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173124	Chromatin interaction

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs1032097	1.00[EUR][1000 genomes]
rs1032098	1.00[EUR][1000 genomes]
rs11572073	1.00[EUR][1000 genomes]
rs11572081	1.00[EUR][1000 genomes]
rs11572089	1.00[EUR][1000 genomes]
rs11572132	1.00[EUR][1000 genomes]
rs11572145	1.00[EUR][1000 genomes]
rs11572148	1.00[EUR][1000 genomes]
rs11572176	1.00[EUR][1000 genomes]
rs11812764	1.00[EUR][1000 genomes]
rs11813834	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11814600	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11815378	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11816316	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11816732	1.00[EUR][1000 genomes]
rs11817176	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11817388	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11818420	0.89[AMR][1000 genomes]
rs11818486	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11819238	1.00[EUR][1000 genomes]
rs2094293	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2094294	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2860950	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2860951	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45454292	1.00[EUR][1000 genomes]
rs45487391	1.00[EUR][1000 genomes]
rs45491002	1.00[EUR][1000 genomes]
rs45495404	1.00[EUR][1000 genomes]
rs45620737	1.00[EUR][1000 genomes]
rs55700247	1.00[EUR][1000 genomes]
rs55740007	1.00[EUR][1000 genomes]
rs55786415	1.00[EUR][1000 genomes]
rs55915838	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55937167	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56094588	1.00[EUR][1000 genomes]
rs56187632	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56264187	1.00[EUR][1000 genomes]
rs56412102	1.00[EUR][1000 genomes]
rs56979418	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56999073	1.00[EUR][1000 genomes]
rs58894719	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59277980	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59282006	1.00[EUR][1000 genomes]
rs59329992	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59485845	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59533405	1.00[EUR][1000 genomes]
rs60480656	1.00[EUR][1000 genomes]
rs60916665	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61478963	1.00[EUR][1000 genomes]
rs61634481	1.00[EUR][1000 genomes]
rs6583982	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6583986	1.00[EUR][1000 genomes]
rs7070484	1.00[EUR][1000 genomes]
rs7074994	1.00[EUR][1000 genomes]
rs7078505	1.00[EUR][1000 genomes]
rs7083576	1.00[EUR][1000 genomes]
rs7083837	1.00[EUR][1000 genomes]
rs7084045	1.00[EUR][1000 genomes]
rs7085646	1.00[EUR][1000 genomes]
rs7087494	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7088962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7090248	1.00[EUR][1000 genomes]
rs7090669	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7090961	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7091711	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7093626	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7100479	1.00[EUR][1000 genomes]
rs74150750	1.00[EUR][1000 genomes]
rs74150764	1.00[EUR][1000 genomes]
rs74150766	1.00[EUR][1000 genomes]
rs74150767	1.00[EUR][1000 genomes]
rs74150768	1.00[EUR][1000 genomes]
rs74150772	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150780	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150781	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150782	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150785	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150786	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74150792	1.00[EUR][1000 genomes]
rs74150793	1.00[EUR][1000 genomes]
rs74150795	1.00[EUR][1000 genomes]
rs7894207	1.00[EUR][1000 genomes]
rs7915255	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7918727	1.00[EUR][1000 genomes]
rs7918803	1.00[EUR][1000 genomes]
rs7919415	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv21432	chr10:96856006-96996043	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv1834151	chr10:96925446-96992955	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96943400-96955200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:96944000-96954800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:96944000-96955200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:96944000-96955800	Weak transcription	Aorta	Aorta
5	chr10:96944000-96961400	Weak transcription	Fetal Intestine Small	intestine
6	chr10:96944200-96990400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:96948600-96955200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:96948800-96954200	Weak transcription	HepG2	liver
9	chr10:96949800-96980600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr10:96951400-96952000	Enhancers	Pancreas	Pancrea
11	chr10:96951600-96952000	Active TSS	Stomach Mucosa	stomach

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